Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402269.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5352.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2748
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.25

Warning! 868 characters in sequence are not A, C, G, or T


Found at i:2447 original size:172 final size:171

Alignment explanation


    Indices: 2267--2748  Score: 522
    Period size: 173  Copynumber: 2.8  Consensus size: 171

       2257 NNNNNNNNNN

                         *              *   *           *                    
       2267 ACTTTTCTTGTCAGTGAATATCTTTTTCATCACGTTTCCCACTGCAGACATGT-AATTATAATCT
          1 ACTTTTCTTGTCAATGAATATCTTTTTCTTCATGTTTCCCA-TGTAGACAT-TCAATTATAATCT

                            *                   *                            
       2331 GTTCTAA-ACAAAAATGTACAAACAATTCAAATTTATATCAATTTTGAGATTATAAAACCATTTA
         64 GTTCTAACA-AAAAATATACAAACAATTCAAATTTAAATCAATTTTGAGATTATAAAACCATTTA

                *                                        
       2395 AAGTTAGTAACAAGGCTTTTCAAAGAAT-GAGTGACTATAAATGG
        128 AAGTGAGTAACAAGGCTTTTCAAAGAATGGA-TGACTATAAATGG

             *                  *     *             ** *              *    * 
       2439 AGTTTTCTTG-CTAATGAATGTCTTTATCTTCATGTTTCTTGAGGTAGACATTCAATTGTAATAT
          1 ACTTTTCTTGTC-AATGAATATCTTTTTCTTCATGTTTC-CCATGTAGACATTCAATTATAATCT

               *                  *                                     *    
       2503 GTTTTAACAAAAAATATACAAAGAATTCAAATTTAAATCAATTTTTGAGATTATAAAACCGTTTA
         64 GTTCTAACAAAAAATATACAAACAATTCAAATTTAAATCAA-TTTTGAGATTATAAAACCATTTA

                      *         *  * *    **********    
       2568 AAGTGAGTAATAAGGCTTTTGAAGGTATGGNNNNNNNNNNATGG
        128 AAGTGAGTAACAAGGCTTTTCAAAGAATGGATGACTATAAATGG

                                *                   *                       *
       2612 ACTTTTCTTGTCAATGAATAACTTTTTCTTCATGTTTTCCAATGTAGACATTCAATTATAATCTT
          1 ACTTTTCTTGTCAATGAATATCTTTTTCTTCATG-TTTCCCATGTAGACATTCAATTATAATCTG

                   *         *                                       *       
       2677 TTCTAACTAAAAATATAGAAACAATTCAAATTTAAATCAATTTTGAGATTATAAAACTATTTAAA
         65 TTCTAACAAAAAATATACAAACAATTCAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAA

                   
       2742 GTGAGTA
        130 GTGAGTA


Statistics
Matches: 254,  Mismatches: 48, Indels: 16
        0.80            0.15        0.05

Matches are distributed among these distances:
 171    2  0.01
 172  111  0.44
 173  135  0.53
 174    6  0.02

ACGTcount: A:0.36, C:0.12, G:0.12, T:0.37


Consensus pattern (171 bp):   
ACTTTTCTTGTCAATGAATATCTTTTTCTTCATGTTTCCCATGTAGACATTCAATTATAATCTGT
TCTAACAAAAAATATACAAACAATTCAAATTTAAATCAATTTTGAGATTATAAAACCATTTAAAG
TGAGTAACAAGGCTTTTCAAAGAATGGATGACTATAAATGG

Done.