Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397755.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1051.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2276
ACGTcount: A:0.19, C:0.05, G:0.11, T:0.15

Warning! 1134 characters in sequence are not A, C, G, or T


Found at i:954 original size:16 final size:15

Alignment explanation


    Indices: 933--976  Score: 61
    Period size: 16  Copynumber: 2.8  Consensus size: 15

        923 ACGAAGAGAG

                            
        933 GAAAGAAAAAAAGGAA
          1 GAAAGAAAAAAAGG-A

                    *      
        949 GAAAGAAAGAAAGGA
          1 GAAAGAAAAAAAGGA

                         
        964 GAAAGAAGAAAAA
          1 GAAAGAA-AAAAA

        977 NNNNNNNNNN


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  15    8  0.32
  16   17  0.68

ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00


Consensus pattern (15 bp):   
GAAAGAAAAAAAGGA
Done.