Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402286.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5369.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1286
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.35

Warning! 70 characters in sequence are not A, C, G, or T


Found at i:447 original size:54 final size:54

Alignment explanation


    Indices: 365--470  Score: 212
    Period size: 54  Copynumber: 2.0  Consensus size: 54

        355 GTTAGGAATA

                                                                  
        365 AGGAATTGTTGATTTTGATGAATAGTGGTAGACTGGTTTATTACAATCTTAATG
          1 AGGAATTGTTGATTTTGATGAATAGTGGTAGACTGGTTTATTACAATCTTAATG

                                                                
        419 AGGAATTGTTGATTTTGATGAATAGTGGTAGACTGGTTTATTACAATCTTAA
          1 AGGAATTGTTGATTTTGATGAATAGTGGTAGACTGGTTTATTACAATCTTAA

        471 AACTAAAAGT


Statistics
Matches: 52,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  54   52  1.00

ACGTcount: A:0.30, C:0.06, G:0.24, T:0.41


Consensus pattern (54 bp):   
AGGAATTGTTGATTTTGATGAATAGTGGTAGACTGGTTTATTACAATCTTAATG
Done.