Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: NW_018402306.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5388.0, whole genome shotgun sequence Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1754 ACGTcount: A:0.28, C:0.11, G:0.09, T:0.30 Warning! 368 characters in sequence are not A, C, G, or T Found at i:1589 original size:171 final size:159 Alignment explanation
Indices: 1439--1754 Score: 425 Period size: 171 Copynumber: 1.9 Consensus size: 159 1429 NNNNNNNNNN * 1439 ATTTTATAATCTCATAATTGATTTTAATTTGAATTATTTTATATTTTTTGTTAAAACATATTATA 1 ATTTTATAACCTCATAATTGATTTTAATTTGAATT-TTTTATATTTTTTGTTAAAACATATTATA 1504 ATTAAATGTTTTTCCCGAGAAACTTAAAGAAAAAGATATCCATTAGCAAGAAAAGTACATTTATA 65 ATTAAATGTTTTTCCC-AGAAACTTAAAGAAAAAGATATCCATTAGCAAGAAAAGTACATTTATA *** 1569 GTCACCGATGCCTTCAAAAGCCTTATTANNNNNNNNNNNNN 129 GTCACCGATGCCTTCAAAAGCCTTATTA----------CTC **** 1610 NNNNTATAACCTCATAATTGATTTTAATTTGAATTTTTTTATATTTTTTGTTAAAACATATTATA 1 ATTTTATAACCTCATAATTGATTTTAATTTGAA-TTTTTTATATTTTTTGTTAAAACATATTATA 1675 ATTAAATGTTTTTCCCCAGAAACTTAAAGAAAAAGATATCCATTAGCAAGAAAAGTACATTTATA 65 ATTAAATGTTTTT-CCCAGAAACTTAAAGAAAAAGATATCCATTAGCAAGAAAAGTACATTTATA * 1740 GTCACCCATGCCTTC 129 GTCACCGATGCCTTC Statistics Matches: 137, Mismatches: 6, Indels: 4 0.93 0.04 0.03 Matches are distributed among these distances: 171 132 0.96 172 5 0.04 ACGTcount: A:0.36, C:0.12, G:0.09, T:0.38 Consensus pattern (159 bp): ATTTTATAACCTCATAATTGATTTTAATTTGAATTTTTTATATTTTTTGTTAAAACATATTATAA TTAAATGTTTTTCCCAGAAACTTAAAGAAAAAGATATCCATTAGCAAGAAAAGTACATTTATAGT CACCGATGCCTTCAAAAGCCTTATTACTC Done.