Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402310.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5392.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3031
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34


Found at i:551 original size:33 final size:33

Alignment explanation


    Indices: 509--587  Score: 133
    Period size: 33  Copynumber: 2.4  Consensus size: 33

        499 TTTATTGAAA

                                              
        509 GTGTTGAAGACACCAATGAAGTAATAA-AGTACT
          1 GTGTTGAAGACACCAATGAAGT-ATAAGAGTACT

                                             
        542 GTGTTGAAGACACCAATGAAGTATAAGAGTACT
          1 GTGTTGAAGACACCAATGAAGTATAAGAGTACT

            *            
        575 CTGTTGAAGACAC
          1 GTGTTGAAGACAC

        588 TTTCAAGTAA


Statistics
Matches: 44,  Mismatches: 1, Indels: 2
        0.94            0.02        0.04

Matches are distributed among these distances:
  32    4  0.09
  33   40  0.91

ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24


Consensus pattern (33 bp):   
GTGTTGAAGACACCAATGAAGTATAAGAGTACT
Done.