Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402336.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5417.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1191
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38


Found at i:361 original size:171 final size:170

Alignment explanation


    Indices: 6--1191  Score: 1266
    Period size: 170  Copynumber: 7.0  Consensus size: 170

          1 GTTCA

                       *      *          *                 *  *  * ***       
          6 ATTTGTTTTACTTTTTTGGTTAAAACAGATTATAATTGAATGTCTACATCAAGGATTGTGAAGAA
          1 ATTT-TTTTACATTTTTGTTTAAAACAGACTATAATTGAATGTCTACCTCGAGAAACATGAAGAA

                                              *           *                  
         71 AAA-AGCATTCATTGGCAAGAAAAGTCCATTTATTGTCACCCATTCCTTCAAAAGCCTTATTACT
         65 AAAGA-CATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACT

                           **    *            *       
        135 CGCTTTAAATGGTTTCGTAATATCATAATTGATTATAAGTTG
        129 CGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG

                           * *       **    *         *    *           *      
        177 AATTTTTTTACATTTCTCTTTAAAATGGACTTTAATTGAATATCTAGCT-GAGGAAACGT-ATAG
          1 -ATTTTTTTACATTTTTGTTTAAAACAGACTATAATTGAATGTCTACCTCGA-GAAACATGA-AG

                * *    *                         **                   *      
        240 AAAATGCCATTTATTGAG-AAGAAAAGTCCATTTATAAACACCCATTCTTTCAAAAGCATTATTA
         63 AAAAAGACATTCATTG-GCAAGAAAAGTCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTA

              *                      *      *         * 
        304 CTTGCTTTAAATGGTTTTATAATCTTATAATTCATTTTAAGTCG
        127 CTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG

                  *                  *                         *   *  *      
        348 ATTGTTGTTACATTTTT-TGTTAAACCA-ACTATAATTGAATGTCTACCTCAAGACACGTGAAGA
          1 ATT-TTTTTACATTTTTGT-TTAAAACAGACTATAATTGAATGTCTACCTCGAGAAACATGAAGA

                * *      *                           *             *         
        411 AAAAAATATTCATGGGCTAA-AAAAGTCCATTTATAGTCACTCATTCTTTCAAAAACCTTATTAC
         64 AAAAGACATTCATTGGC-AAGAAAAGTCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTAC

            *  *        *                  *           *
        475 GCGTTTTAAATGATTTTATAATCTCATAATTAATTTTAAGTTAA
        128 TCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTT-G

                              *        *         *  *                        
        519 ATTTTTTTATC-TTTTTGGTTAAAACAAACTATAATTTAAAGTCTACCTCGAGAAACAT-ATAGA
          1 ATTTTTTTA-CATTTTTGTTTAAAACAGACTATAATTGAATGTCTACCTCGAGAAACATGA-AGA

                                      *        *                             
        582 AAAAGACATTCATTGGCAAG-AAAGTACATTTATAATCACCCATTCTTTCAAAAGCCTTATTACT
         64 AAAAGACATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACT

             *    *                      *           *
        646 CACTTTGAATGGTTTTATAATCTCATAATCGATTTTAAGTTT
        129 CGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG

             *       *       *                  *        *                   
        688 AATTTTTTATATTTTTGGTTAAAACAGACTATAATTAAATGTCTATCTCGAGAAACATGAAGAAA
          1 ATTTTTTTACATTTTTGTTTAAAACAGACTATAATTGAATGTCTACCTCGAGAAACATGAAGAAA

                                                  **               *        *
        753 AAG-CATTCATTGGCAAGAAAAGTCCATTTATAGTCACTAATTCTTTCAAAAGCCCTATTACTCC
         66 AAGACATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACTCG

                   **                               
        817 CTTTAAACAGTTTTATAATCTCATAATTGATTTTAAGTTG
        131 CTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG

               *      *                  *                     *             
        857 AATATTTTTATATTTTTTGTTT-AAACAGGCTATAATTGAATGTCTACCTCCAGAAACATGAAGA
          1 -ATTTTTTTACA-TTTTTGTTTAAAACAGACTATAATTGAATGTCTACCTCGAGAAACATGAAGA

                                                *  *              * *        
        921 AAAAGACATTCATTGGCAAGAAAAGTCCATTTATAGCCATCCATTCTTTCAAAATCTTTATTACT
         64 AAAAGACATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACT

            **                           *           *
        986 TACTTTAAATGGTTTTATAATCTCATAATGGATTTTAAGTTA
        129 CGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG

             *        *      *      * *      *       *  **            *      
       1028 AATTTTTTACTTTTTTGGTTAAAATAAACTATAGTTGAATGCCTGTCTC-AGAAAACAAGAAGGA
          1 ATTTTTTTACATTTTTGTTTAAAACAGACTATAATTGAATGTCTACCTCGAG-AAACATGAA-GA

                                                 ** *                       *
       1092 AAAAG-CATTCATTGGCAAGAAAAGTCCATTTATAGTTTCTCATTCTTTCAAAAGCCTTATTACC
         64 AAAAGACATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACT

                *                               
       1156 CGCTGTAAATGGTTTTATAATCTCATAATTGATTTT
        129 CGCTTTAAATGGTTTTATAATCTCATAATTGATTTT


Statistics
Matches: 844,  Mismatches: 145, Indels: 52
        0.81            0.14        0.05

Matches are distributed among these distances:
 168   14  0.02
 169  145  0.17
 170  382  0.45
 171  298  0.35
 172    5  0.01

ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38


Consensus pattern (170 bp):   
ATTTTTTTACATTTTTGTTTAAAACAGACTATAATTGAATGTCTACCTCGAGAAACATGAAGAAA
AAGACATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTCTTTCAAAAGCCTTATTACTCG
CTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTG

Done.