Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402341.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5422.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1166
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33


Found at i:743 original size:29 final size:30

Alignment explanation


    Indices: 699--760  Score: 99
    Period size: 29  Copynumber: 2.1  Consensus size: 30

        689 GGCCAATGCT

                                          
        699 ATTATTTACCCCTAAATTTTT-CTTCACAA
          1 ATTATTTACCCCTAAATTTTTGCTTCACAA

                      **                  
        728 ATTATTTACCTTTAAATTTTTGCTTCACAA
          1 ATTATTTACCCCTAAATTTTTGCTTCACAA

               
        758 ATT
          1 ATT

        761 CGATCCATTA


Statistics
Matches: 30,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  29   19  0.63
  30   11  0.37

ACGTcount: A:0.31, C:0.19, G:0.02, T:0.48


Consensus pattern (30 bp):   
ATTATTTACCCCTAAATTTTTGCTTCACAA

Done.