Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402342.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5423.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 737

Length: 1229
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40


Found at i:775 original size:21 final size:22

Alignment explanation


    Indices: 750--790  Score: 59
    Period size: 21  Copynumber: 1.9  Consensus size: 22

        740 GAAAATCCAT

                                   
        750 AAAATAGAAAGA-ATT-TTTTAA
          1 AAAATA-AAAGATATTCTTTTAA

                                
        771 AAAATAAAAGATATTCTTTT
          1 AAAATAAAAGATATTCTTTT

        791 TAAGGCTTAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  20    5  0.28
  21    9  0.50
  22    4  0.22

ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37


Consensus pattern (22 bp):   
AAAATAAAAGATATTCTTTTAA
Done.