genome.fa.s5096.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018402349.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_543.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40880

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372--812	171	2.6	161	77	13	335	35	12	13	36	1.82
524--1265	171	4.4	171	73	6	416	35	11	15	35	1.83
848--1177	170	2.0	162	77	8	324	35	12	14	34	1.84
1015--1367	172	2.1	171	83	4	453	37	12	14	35	1.84
3659--5606	171	11.4	171	71	5	919	37	11	13	33	1.81
6780--7223	171	2.6	168	79	6	451	34	11	14	36	1.83
12896--14134	171	7.2	169	72	6	730	34	14	11	35	1.82
14616--15297	171	4.0	168	74	4	580	34	14	12	36	1.83
16310--16692	170	2.2	172	83	4	490	35	15	10	38	1.82
18021--18381	169	2.1	167	80	11	398	35	16	10	37	1.83
19594--21167	170	9.3	170	77	4	1321	34	14	10	38	1.82
19594--21167	339	4.6	340	77	4	1386	34	14	10	38	1.82
25059--25863	344	2.4	331	74	8	684	33	14	11	36	1.82
27263--27618	169	2.1	171	83	4	443	34	15	11	37	1.84
26712--27911	170	7.1	170	72	6	659	34	13	11	36	1.81
29149--30664	171	8.9	169	67	8	583	33	12	10	37	1.78
29994--30425	172	2.5	171	80	7	428	35	13	10	40	1.79
32966--34419	171	8.5	169	78	6	1163	40	10	13	35	1.80
33070--34415	512	2.6	507	81	5	1444	39	11	13	35	1.80
33070--34419	341	4.0	341	79	5	1402	39	11	13	35	1.80
34830--35214	170	2.3	169	80	6	429	36	12	10	40	1.78
35345--35774	172	2.5	169	82	5	499	35	13	10	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35948--36487	171	3.2	170	74	6	444	35	12	10	38	1.76
36875--37607	173	4.2	171	80	5	717	36	14	11	37	1.83
36875--37626	172	4.4	171	80	7	700	36	14	11	37	1.83
38436--38768	171	2.0	162	82	1	319	35	11	13	36	1.81

Tables:   1

The End!