Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397304.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4583.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  185427

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--73
18
3.7
18
72
10
59
11
2
55
30
1.50
25--79
18
2.8
20
75
16
60
14
5
50
29
1.65
1--106
39
2.7
39
83
0
113
15
2
53
28
1.55
22--91
21
3.5
21
78
11
83
12
4
54
28
1.57
3083--3166
7
12.4
7
71
11
50
34
45
4
15
1.67
3076--3132
20
2.9
19
92
7
89
33
49
5
12
1.63
4478--4534
30
1.9
30
85
7
80
54
3
3
38
1.35
4478--4543
30
2.2
29
81
10
71
57
4
3
34
1.34
5155--5223
28
2.5
28
87
0
93
46
11
1
40
1.49
5383--5412
2
15.0
2
92
0
51
50
3
0
46
1.18
5437--5472
14
2.6
14
90
0
54
22
19
16
41
1.90
19375--19406
2
16.0
2
100
0
64
50
0
0
50
1.00
37169--37235
32
2.1
33
97
2
127
34
11
14
38
1.84
52833--53014
90
2.0
90
83
6
226
47
12
8
31
1.71
52967--53083
58
2.0
58
95
3
209
50
10
11
28
1.70
53113--53159
23
2.0
23
91
0
76
61
4
10
23
1.46
57782--57809
2
14.0
2
100
0
56
50
0
0
50
1.00
60033--60090
24
2.4
24
79
0
71
12
5
62
20
1.49
60050--60104
27
2.0
27
85
0
74
7
3
63
25
1.37
59995--60235
99
2.4
99
82
2
286
13
6
55
24
1.62
60364--60406
15
2.9
15
89
6
61
13
4
62
18
1.48
60505--60539
18
1.9
18
88
0
52
17
0
45
37
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70155--70277
60
2.0
60
96
0
228
19
13
27
39
1.90
74425--74517
2
46.0
2
95
2
168
50
0
1
48
1.07
81875--81913
2
21.0
2
85
15
57
46
0
0
53
1.00
90375--90409
18
1.9
18
88
0
52
31
54
2
11
1.51
105580--105604
2
12.5
2
100
0
50
48
0
0
52
1.00
107118--107147
3
10.0
3
100
0
60
33
0
0
66
0.92
110064--110092
5
5.8
5
100
0
58
0
62
20
17
1.33
132550--132584
18
2.0
17
88
5
52
60
0
2
37
1.12
132947--132992
4
11.2
4
82
17
51
71
0
0
28
0.86
132947--132992
18
2.5
17
86
10
56
71
0
0
28
0.86
140495--140526
2
16.0
2
100
0
64
50
0
0
50
1.00
142220--142265
24
1.9
23
83
16
58
41
23
0
34
1.55
153432--153456
12
2.1
12
100
0
50
48
0
52
0
1.00
162632--162656
2
12.5
2
100
0
50
52
0
0
48
1.00
162656--162684
2
14.5
2
100
0
58
51
0
48
0
1.00
163659--163683
2
12.5
2
100
0
50
52
0
0
48
1.00
172074--172221
62
2.4
63
78
7
151
30
9
6
54
1.57
183121--183161
22
1.9
22
85
5
57
36
7
9
46
1.65
184345--184391
24
1.9
25
83
12
62
55
2
0
42
1.12

Tables:   1

The End!