Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397763.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1060.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4946
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.20

Warning! 2279 characters in sequence are not A, C, G, or T


Found at i:1384 original size:21 final size:21

Alignment explanation


    Indices: 1355--1411  Score: 105
    Period size: 21  Copynumber: 2.7  Consensus size: 21

       1345 GGAGACTATA

                *                
       1355 AATGGATTTTTCTTTCCATTG
          1 AATGCATTTTTCTTTCCATTG

                                 
       1376 AATGCATTTTTCTTTCCATTG
          1 AATGCATTTTTCTTTCCATTG

                           
       1397 AATGCATTTTTCTTT
          1 AATGCATTTTTCTTT

       1412 AAGTTTCTCA


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   35  1.00

ACGTcount: A:0.19, C:0.16, G:0.11, T:0.54


Consensus pattern (21 bp):   
AATGCATTTTTCTTTCCATTG
Done.