Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402354.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5434.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 683

Length: 1139
ACGTcount: A:0.23, C:0.07, G:0.08, T:0.23

Warning! 446 characters in sequence are not A, C, G, or T


Found at i:421 original size:170 final size:168

Alignment explanation


    Indices: 170--591  Score: 394
    Period size: 170  Copynumber: 2.5  Consensus size: 168

        160 TTTTTGATGC

                             *                  **   *                 * **  
        170 AAACATTCAATTATAATCTGTTTTAATAAAAATATAGGAAAGTTCAACTTAAAACTAATCACAAG
          1 AAACATTCAATTATAATTTGTTTTAATAAAAATATAAAAAAATTCAA-TTAAAAC-AATTATGAG

                *    *                                   *                   
        235 ATTAAAAAAGCATTTAAAGTGAGTAATAAAGCTTTCGAAGGCATGGGTGACCATAAATGGACTTT
         64 ATTATAAAATCATTTAAAGTGAGTAATAAAGCTTTCGAAGGCATGAGTGACCATAAATGGACTTT

               ***********             *       *    
        300 TCTTNNNNNNNNNNATCTTTTTCTTCATGTTTCTCGAGGT
        129 TCTAGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGT

             *                    *                    *                     
        340 AGACATTCAATTATAATTTGTTCTAATAAAAAATATAAAAAAACTCAATTAAAATCAATTATGAG
          1 AAACATTCAATTATAATTTGTTTTAAT-AAAAATATAAAAAAATTCAATTAAAA-CAATTATGAG

                               ***********     *             * *             
        405 ATTATAAAATCATTTAAAGNNNNNNNNNNGGCTTTTGAAGGCATGAGTGGCTATAAATGGACTTT
         64 ATTATAAAATCATTTAAAGTGAGTAATAAAGCTTTCGAAGGCATGAGTGACCATAAATGGACTTT

                                                    
        470 TCTAGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGT
        129 TCTAGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGT

                *          *                             *                   
        510 AAACTTTCAATTATAGTTTGTTTTAATTAAAAATATAAAAAAATTAAATTAAAACCAATTATGAG
          1 AAACATTCAATTATAATTTGTTTTAA-TAAAAATATAAAAAAATTCAATTAAAA-CAATTATGAG

            *                
        575 GTTATAAAATCATTTAA
         64 ATTATAAAATCATTTAA

        592 NNNNNNNNNN


Statistics
Matches: 201,  Mismatches: 48, Indels: 6
        0.79            0.19        0.02

Matches are distributed among these distances:
 170  183  0.91
 171   18  0.09

ACGTcount: A:0.39, C:0.11, G:0.12, T:0.34


Consensus pattern (168 bp):   
AAACATTCAATTATAATTTGTTTTAATAAAAATATAAAAAAATTCAATTAAAACAATTATGAGAT
TATAAAATCATTTAAAGTGAGTAATAAAGCTTTCGAAGGCATGAGTGACCATAAATGGACTTTTC
TAGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGT
Done.