Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402363.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5442.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2037
ACGTcount: A:0.23, C:0.09, G:0.10, T:0.22

Warning! 746 characters in sequence are not A, C, G, or T


Found at i:1767 original size:12 final size:12

Alignment explanation


    Indices: 1752--1777  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1742 AAATGGTTTC

                        
       1752 ATAAACTAAAAA
          1 ATAAACTAAAAA

                        
       1764 ATAAACTAAAAA
          1 ATAAACTAAAAA

              
       1776 AT
          1 AT

       1778 TGTTTTAAGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.73, C:0.08, G:0.00, T:0.19


Consensus pattern (12 bp):   
ATAAACTAAAAA
Done.