Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402391.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5470.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2263
ACGTcount: A:0.21, C:0.06, G:0.08, T:0.21

Warning! 1016 characters in sequence are not A, C, G, or T


Found at i:2240 original size:171 final size:167

Alignment explanation


    Indices: 1724--2261  Score: 538
    Period size: 171  Copynumber: 3.1  Consensus size: 167

       1714 NNNNNNNNNN

                                                                             
       1724 CATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAATTTAAACTTAAAATCAATTATGAGAT
          1 CATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAATTT-AACTTAAAATCAATTATGAGAT

                    *      * *     *    *         *    *                    *
       1789 TATAAAACCATTTAATGTGAGTATTAAGACTTTTGAAGGAATATGTGACTATAAATGGACTTTTC
         65 TATAAAA-TATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATAGGTGACTATAAATGGACTTTTT

                                    *  *  *     **    
       1854 TTCGGT-ATGAATGGTTTTTTCTTTATATTGCTTGATCTAGA
        129 TTC--TAATGAAT-GTTTTTTCTTCATGTTTCTTGAGATAGA

            *           *              *     *         *   *      *    *     
       1895 TATTCAATTATAATCTGTTTTAACCAATAATGCAAAAAGAATTGAACCTAAAATGAATTTTGAGA
          1 CATTCAATTATAGTCTGTTTTAACCAAAAATG-TAAAA-AATTTAACTTAAAATCAATTATGAGA

                             *   *        *        *   *   *                 
       1960 TTATAAAACTATTTAAAACGAATAATAAGGTTTTTGAAGTAATGGGTCACTATAAATGGACTTTT
         64 TTATAAAA-TATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATAGGTGACTATAAATGGACTTTT

               * *    *                 *             
       2025 CTTCCCAATGCATGTGTTTTTCTTCATGCTTCTTGAGATAGA
        128 -TTTCTAATGAATGT-TTTTTCTTCATGTTTCTTGAGATAGA

                             *     **                                        
       2067 CATTCAATTATAGTCTGCTTTAAGTAAAAATGTGAAAAAATTTAACTTAAAATCAATTATGAGAT
          1 CATTCAATTATAGTCTGTTTTAACCAAAAATGT-AAAAAATTTAACTTAAAATCAATTATGAGAT

                        *             *      **          *             *     
       2132 TATAAAATAATTCAAAGCGAGTAATATGGCTTTCAAAGAAATAGGAGACTATAAATGGATTTTTG
         65 TATAAAAT-ATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATAGGTGACTATAAATGGACTTTT-

                         *  *        *          *    
       2197 TTTCTAATGAATACTTGTTTCTTCACGTTTCTTGAGGTAGA
        128 TTTCTAATGAAT-GTTTTTTCTTCATGTTTCTTGAGATAGA

                *                   
       2238 CATTTAATTATAGTCTGTTTTAAC
          1 CATTCAATTATAGTCTGTTTTAAC

       2262 TA


Statistics
Matches: 294,  Mismatches: 65, Indels: 16
        0.78            0.17        0.04

Matches are distributed among these distances:
 170    1  0.00
 171  156  0.53
 172  131  0.45
 173    6  0.02

ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38


Consensus pattern (167 bp):   
CATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAATTTAACTTAAAATCAATTATGAGATT
ATAAAATATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATAGGTGACTATAAATGGACTTTTTTT
CTAATGAATGTTTTTTCTTCATGTTTCTTGAGATAGA
Done.