Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402396.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5475.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1869
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.28

Warning! 525 characters in sequence are not A, C, G, or T


Found at i:455 original size:20 final size:18

Alignment explanation


    Indices: 427--475  Score: 53
    Period size: 18  Copynumber: 2.6  Consensus size: 18

        417 NNNNTATTTT

                *               
        427 AATAATATTTTATTCATAAA
          1 AATATTATTTTATT--TAAA

                      *       
        447 AATATTATTTGATTTAAA
          1 AATATTATTTTATTTAAA

                  *    
        465 AATATTCTTTT
          1 AATATTATTTT

        476 TACCTATCAC


Statistics
Matches: 25,  Mismatches: 4, Indels: 2
        0.81            0.13        0.06

Matches are distributed among these distances:
  18   13  0.52
  20   12  0.48

ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51


Consensus pattern (18 bp):   
AATATTATTTTATTTAAA
Done.