Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402402.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5480.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 874

Length: 1458
ACGTcount: A:0.24, C:0.08, G:0.10, T:0.23

Warning! 510 characters in sequence are not A, C, G, or T


Found at i:485 original size:171 final size:169

Alignment explanation


    Indices: 2--520  Score: 466
    Period size: 171  Copynumber: 3.0  Consensus size: 169

          1 G

                                              *            *         *   *   
          2 GTGACTATAAATGGACTTTTCTTCTCAATGAATGGTTTTTTTGCACATTTTTTAAGGTAGGTATT
          1 GTGACTATAAATGGACTTTTCTTCTCAATGAATGCTTTTTTTGCAC-GTTTTTAAGGCAGGCATT

                   *        *            *                        ********** 
         67 TAATTATTGTCTGTTTGAACCAAAAAATGAAAAAAAATTCAACTTAAAATCAATNNNNNNNNNNT
         65 TAATTATAGTCTGTTTCAA-CAAAAAATGTAAAAAAATTCAACTTAAAATCAATTACGAGATTAT

                  *                              *    
        132 AAAACCATTTAAAGCGAGTAATAA-CGCTTTTGAAGGTATGA
        129 AAAACCGTTTAAAGCGAGTAATAAGC-CTTTTGAAGGAATGA

                        *       *     *              *           *      **  *
        173 GTGACTATAAATAGACTTTTTTTCTCCATGAATGGCTTTTTCTGCACGTTTTCCAAGGCAAACAA
          1 GTGACTATAAATGGACTTTTCTTCTCAATGAAT-GCTTTTTTTGCACGTTTT-TAAGGCAGGCAT

             *           *    *  * *                                     ****
        238 TCACA-TATAGTCGGTTTTAATAGAAAATGTAAAAAAATTCAACTTAAAATCAATTACGAGNNNN
         64 TTA-ATTATAGTCTGTTTCAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTACGAGATTA

            ******                                    
        302 NNNNNNCGTTTAAAGCGAGTAATAAGCCTTTTGAAGGAATGA
        128 TAAAACCGTTTAAAGCGAGTAATAAGCCTTTTGAAGGAATGA

                   *   *                       *                  *          
        344 GTGACTAGAAACGGACTTTTCTTCTCAATGAATGATTTTTTTTGCACGTTTCTTGAGGCAGGCAT
          1 GTGACTATAAATGGACTTTTCTTCTCAATGAATG-CTTTTTTTGCACGTTT-TTAAGGCAGGCAT

                                                              *    **        
        409 TTAATTATAGTCTGTTTCAACAAAAAATGTAAAAAAATTCAACTTAAAATAAATTTTGAGATTAT
         64 TTAATTATAGTCTGTTTCAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTACGAGATTAT

                *         *           *       *    * 
        474 AAAATCGTTTAAAGTGAGTAATAAGCTTTTTGAAAGAATAA
        129 AAAACCGTTTAAAGCGAGTAATAAGCCTTTTGAAGGAATGA

                  
        515 GTGACT
          1 GTGACT

        521 TTNNNNNNNN


Statistics
Matches: 274,  Mismatches: 67, Indels: 14
        0.77            0.19        0.04

Matches are distributed among these distances:
 170    2  0.01
 171  238  0.87
 172   33  0.12
 173    1  0.00

ACGTcount: A:0.36, C:0.12, G:0.15, T:0.34


Consensus pattern (169 bp):   
GTGACTATAAATGGACTTTTCTTCTCAATGAATGCTTTTTTTGCACGTTTTTAAGGCAGGCATTT
AATTATAGTCTGTTTCAACAAAAAATGTAAAAAAATTCAACTTAAAATCAATTACGAGATTATAA
AACCGTTTAAAGCGAGTAATAAGCCTTTTGAAGGAATGA
Done.