Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402415.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5494.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 964

Length: 1607
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.29

Warning! 378 characters in sequence are not A, C, G, or T


Found at i:306 original size:171 final size:160

Alignment explanation


    Indices: 129--455  Score: 381
    Period size: 171  Copynumber: 2.0  Consensus size: 160

        119 AACTTAAAAT

                         *              *                 *   *         *  * 
        129 TAATTATAAGATTGAAAAACTATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGATTATA
          1 TAATTATAAGATTAAAAAACTATTTAAAACGAGTAATAAGGCTTTCAAAGACATGAGTGACTAGA

                                                                             
        194 AATAGACTTTTCTTACCAATAGAT-T-TTTTCTCTAT-ATGTTTCTCAAAGCAGACATTCAATTA
         66 AATAGAC-TTTCTTACCAATAGATATCTTTT-TCT-TCATGTTTCTCAAAGCAGACATTCAATTA

                  *                                     
        256 TAATCTGTTTTAATAAAAAAATATAAAAAAGTNNNNNNNNNNAC
        128 TAATCTATTTTAAT-AAAAAATATAAAAAAGT----------AC

                   *                                     *         *         
        300 TAATTATGAGATTAAAAAACTATTTAAAACGAGTAATAAGGCTTTTAAAGACATGGGTGACTAGA
          1 TAATTATAAGATTAAAAAACTATTTAAAACGAGTAATAAGGCTTTCAAAGACATGAGTGACTAGA

                               *                       * **                  
        365 AATAGACTTTCTTACCAATGGATATCTTTTTCTTCATGTTTCTTATGGCAGACATTCAATTATAA
         66 AATAGACTTTCTTACCAATAGATATCTTTTTCTTCATGTTTCTCAAAGCAGACATTCAATTATAA

                                      
        430 TCTATTTTAATAAAAAATATAAAAAA
        131 TCTATTTTAATAAAAAATATAAAAAA

        456 ATTCAAATTN


Statistics
Matches: 139,  Mismatches: 14, Indels: 7
        0.87            0.09        0.04

Matches are distributed among these distances:
 170   31  0.22
 171  104  0.75
 172    4  0.03

ACGTcount: A:0.40, C:0.11, G:0.12, T:0.35


Consensus pattern (160 bp):   
TAATTATAAGATTAAAAAACTATTTAAAACGAGTAATAAGGCTTTCAAAGACATGAGTGACTAGA
AATAGACTTTCTTACCAATAGATATCTTTTTCTTCATGTTTCTCAAAGCAGACATTCAATTATAA
TCTATTTTAATAAAAAATATAAAAAAGTAC
Done.