Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402416.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5496.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1353
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.31

Warning! 181 characters in sequence are not A, C, G, or T


Found at i:1111 original size:171 final size:170

Alignment explanation


    Indices: 798--1353  Score: 556
    Period size: 171  Copynumber: 3.3  Consensus size: 170

        788 NNNNNNNNNN

                   *                     *        *       **      *          
        798 AAAAATTTAACTTAAAATCAATTATGAGAATATAAAACTATTTAAAACGAGTAACAAGGCTTTCT
          1 AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC-

                                             *      *   *     *     *        
        863 AAAGC-TTGAGTGACTATAAATGGACTTTTCTTACCAATGCATGGCTTTTGC-TC-TATGTTTCC
         65 AAAGCATTGAGTGACTATAAATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACAT-TTT-C

              *  *          *      *                   
        925 TGAGGCAGACATTCAAGTATAATATATTTTAACCAAAAATGTA
        128 TGTGGTAGACATTCAAATATAATCTATTTTAACCAAAAATGTA

                       * *          *       *                   *     *      
        968 AAAATATTCAAGTCAAAATCAATTCTGAGATTTTAAAACCATTTAAAGTGAGAAATAATGCTTTC
          1 AAAA-ATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTC

               *         *                              *                    
       1033 GAACGCATTG-GTAACTATAAATGGACTTTTCTTGCCAATGAATTACTTTTTCTTCACATTTTCT
         65 -AAAGCATTGAGTGACTATAAATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCT

                           *                *   **    
       1097 GTGGTAGACATTCAATTATAATCTATTTTAACTAAATGTGTA
        129 GTGGTAGACATTCAAATATAATCTATTTTAACCAAAAATGTA

                              *              *                            *  
       1139 AAACAATTCAACTTAAAGGT-AATTATGAGATTTTAAAACCATTTAAAGTGAGTAATAAGGCATT
          1 AAA-AATTCAACTTAAA-ATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTT

                            * *                 *                        *   
       1203 CAAAG-ACTTGAGTGATTGTAAATGGACTTTTCTTGACAATGAATGA-TTTATTCTTCAC-GTTT
         64 CAAAGCA-TTGAGTGACTATAAATGGACTTTTCTTGCCAATGAATGACTTT-TTCTTCACATTTT

                      * *                         *     *  
       1265 CT-TAAGGTATATAGTT-AAATATAATCTATTTTAACCCAAAATATA
        127 CTGT--GGTAGACA-TTCAAATATAATCTATTTTAACCAAAAATGTA

                    *                              *    
       1310 ACAAAATTTAACTTAAAATCAATTATGAGATTATAAAACAATTT
          1 A-AAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT


Statistics
Matches: 318,  Mismatches: 54, Indels: 27
        0.80            0.14        0.07

Matches are distributed among these distances:
 169    2  0.01
 170   19  0.06
 171  281  0.88
 172   14  0.04
 173    2  0.01

ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36


Consensus pattern (170 bp):   
AAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCA
AAGCATTGAGTGACTATAAATGGACTTTTCTTGCCAATGAATGACTTTTTCTTCACATTTTCTGT
GGTAGACATTCAAATATAATCTATTTTAACCAAAAATGTA
Done.