Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402425.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5504.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1836
ACGTcount: A:0.31, C:0.10, G:0.11, T:0.32

Warning! 288 characters in sequence are not A, C, G, or T


Found at i:766 original size:171 final size:171

Alignment explanation


    Indices: 461--778  Score: 399
    Period size: 171  Copynumber: 1.9  Consensus size: 171

        451 TTTTGATTAC

                *           *         *            *        * *              
        461 AAATGAACTGTTTTTGTCAATGAGTGCTTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTAT
          1 AAATAAACTGTTTTTGCCAATGAGTGATTTTTTCTTCACATTTCTCAAAGAAAACATTCAATTAT

               *         *            *                      * *        *    
        526 AGTGTGTTGAAACCAAAAATATAAAACATTTCAACTTAAAATCAATTATGAGATTATAAATCAAT
         66 AGTCTGTTGAAACAAAAAATATAAAAAATTTCAACTTAAAATCAATTATAAAATTATAAAACAAT

                                                     
        591 TTAAAGCAAGTAATAAGGCTTATGAAGGAATGGTAGACTCT
        131 TTAAAGCAAGTAATAAGGCTTATGAAGGAATGGTAGACTCT

                                                  *                          
        632 AAATAAACT-TTTCTTGCCAATGAGTGATTTTTTCTTCTCATTTCT-AGAAGAAAACATTCAATT
          1 AAATAAACTGTTT-TTGCCAATGAGTGATTTTTTCTTCACATTTCTCA-AAGAAAACATTCAATT

                      *****                      *                           
        695 ATAGTCTGTTTTTGTAAAAAATATAAAAAAATTT-AATTTAAAATCAATTATAAAATTATAAAAC
         64 ATAGTCTGTTGAAACAAAAAATAT-AAAAAATTTCAACTTAAAATCAATTATAAAATTATAAAAC

            *         *         
        759 TATTTAAAGCGAGTAATAAG
        128 AATTTAAAGCAAGTAATAAG

        779 ATTTTTGAAA


Statistics
Matches: 123,  Mismatches: 21, Indels: 6
        0.82            0.14        0.04

Matches are distributed among these distances:
 170    4  0.03
 171  111  0.90
 172    8  0.07

ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36


Consensus pattern (171 bp):   
AAATAAACTGTTTTTGCCAATGAGTGATTTTTTCTTCACATTTCTCAAAGAAAACATTCAATTAT
AGTCTGTTGAAACAAAAAATATAAAAAATTTCAACTTAAAATCAATTATAAAATTATAAAACAAT
TTAAAGCAAGTAATAAGGCTTATGAAGGAATGGTAGACTCT
Done.