Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397774.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1072.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4327
ACGTcount: A:0.21, C:0.07, G:0.08, T:0.20

Warning! 1937 characters in sequence are not A, C, G, or T


Found at i:915 original size:170 final size:161

Alignment explanation


    Indices: 570--985  Score: 381
    Period size: 171  Copynumber: 2.5  Consensus size: 161

        560 NNNNNNNNNN

                                                                          *  
        570 TTTTCTTCTCAATGAATGGCTTTTTTTGCACGTTTCTCAAGGTAAACATTTAATTATTATCTTTT
          1 TTTTCTTCTCAATGAATGGCTTTTTTTGCACGTTTCTCAAGGTAAACATTTAATTATTATCTGTT

                                                         *               *   
        635 TTAACCAAAATGTAAAAAAATTCAACTTAAAATCAANNNNNNNNNNATAAAACCATTTAAAGCAA
         66 TTAACCAAAATGTAAAAAAATTCAACTTAAAATCAA---------TATAAAACCATTTAAACCAA

                                                  * 
        700 GTAATAAGCCTTTTGAAGGAATCGGTGACTATAAATGGGC
        122 GTAATAAGCCTTTTGAAGGAATCGGTGACTATAAATGGAC

                                                  **     *                   
        740 TTTTCTTCTCAATGAATGGCTTTTTTTGCACGTTAT-TTGAGGTAGACATTTAATTA-TAGTCTG
          1 TTTTCTTCTCAATGAATGGCTTTTTTTGCACGTT-TCTCAAGGTAAACATTTAATTATTA-TCTG

                            *                            ***                 
        803 TTTTAACCAAAAATGTTAAAAAATTCAACTTAAAATNNNNNNNNNNNNTATAAAACCATTTAAAC
         64 TTTTAACC-AAAATGTAAAAAAATTCAACTTAAAAT---------CAATATAAAACCATTTAAAC

             *         *             *     *           
        868 CGAGTAATAAGGCTTTTGAAGGAATGGGTGATTAT-AATGGAC
        119 CAAGTAATAAGCCTTTTGAAGGAATCGGTGACTATAAATGGAC

                     *                * *   *    *        **   *             
        910 TTTTCTTCTTAATGAATAGGCTTTTTCTACACCTTTCCCAAGGTAAGTATTCAATTA-TAGTCTG
          1 TTTTCTTCTCAATGAAT-GGCTTTTTTTGCACGTTTCTCAAGGTAAACATTTAATTATTA-TCTG

                   *    
        974 TTTTAACAAAAA
         64 TTTTAACCAAAA

        986 ATNNNNNNNN


Statistics
Matches: 205,  Mismatches: 27, Indels: 28
        0.79            0.10        0.11

Matches are distributed among these distances:
 169    2  0.01
 170   89  0.43
 171  114  0.56

ACGTcount: A:0.33, C:0.13, G:0.13, T:0.36


Consensus pattern (161 bp):   
TTTTCTTCTCAATGAATGGCTTTTTTTGCACGTTTCTCAAGGTAAACATTTAATTATTATCTGTT
TTAACCAAAATGTAAAAAAATTCAACTTAAAATCAATATAAAACCATTTAAACCAAGTAATAAGC
CTTTTGAAGGAATCGGTGACTATAAATGGAC
Done.