Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018402463.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_554.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20546

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
341--831
171
2.9
171
83
5
670
34
14
12
38
1.83
1039--1104
32
2.1
32
97
0
123
27
4
9
59
1.48
2641--2687
21
2.2
22
92
3
78
57
14
10
17
1.65
2641--2693
21
2.5
21
87
6
63
52
16
9
20
1.71
3529--3568
21
2.0
20
85
5
53
45
17
15
22
1.85
5710--6906
172
7.0
171
81
8
1113
38
10
13
37
1.80
5710--6906
343
3.5
340
80
7
1227
38
10
13
37
1.80
11624--12019
170
2.3
170
75
4
384
38
10
14
33
1.81
13935--14423
172
2.9
162
77
12
452
33
10
13
38
1.80
13935--14461
170
3.1
171
83
4
435
33
10
14
37
1.81
15059--15470
171
2.4
170
82
3
425
39
10
12
34
1.79
17254--17906
171
3.8
170
80
4
659
39
9
12
34
1.76
17778--18094
172
1.9
162
76
10
307
42
7
11
34
1.70
18814--19350
171
3.2
171
81
1
533
37
10
13
34
1.80
19458--19941
171
2.8
171
83
3
564
34
16
10
35
1.84

Tables:   1

The End!