Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402475.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5550.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 673

Length: 1123
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.35

Warning! 55 characters in sequence are not A, C, G, or T


Found at i:322 original size:171 final size:163

Alignment explanation


    Indices: 125--458  Score: 320
    Period size: 173  Copynumber: 2.0  Consensus size: 163

        115 GCTTTGAATT

                                                                           **
        125 ATTTTATAATCTCATAATTAATTTTAAGTTG-ACTTTCTTTACATTTTTGGT-T-AAAACAGATT
          1 ATTTTATAATCTCATAATTAATTTTAAGTTGAACTTT-TTTACATTTTTGGTCTAAAAACAGACC

                          *           *  *         *                         
        187 ATAATTGAATGCCTGCCTCAAGAAACGTGTAGAACAA-GTCATTCATTGAG-AAGAAAAGT-CCA
         65 ATAATTGAATGCCTACCTCAAGAAACATGAAGAA-AAGGGCATTCATTG-GTAAGAAAA-TCCCA

            *          **            *           
        249 TTTATAATCACTTATTCTTTCAAAAGCCTTATTACTC
        127 CTTATAATCACCCATTCTTTCAAAACCCTTATTACTC

                                         *             *        *     **     
        286 ANNNNNNNNNNTTTTATAATCTCATAATTGATTTTAAGTTGAAGTTTTTTACGTTTTTTTTCTAA
          1 A----------TTTTATAATCTCATAATTAATTTTAAGTTGAACTTTTTTACATTTTTGGTCTAA

                                **  *                                        
        351 AAACAGACCATAATTGAATGTTTATCTCAAGAAACATGAAGAAAAGGGCATTCATTGGTAAGAAA
         56 AAACAGACCATAATTGAATGCCTACCTCAAGAAACATGAAGAAAAGGGCATTCATTGGTAAGAAA

                        *                *             
        416 ATCCCACTTATAGTCACCCATTCTTTCAAGACCCTTATTACTC
        121 ATCCCACTTATAATCACCCATTCTTTCAAAACCCTTATTACTC

        459 GCTTTAAATA


Statistics
Matches: 137,  Mismatches: 20, Indels: 20
        0.77            0.11        0.11

Matches are distributed among these distances:
 161    1  0.01
 171   40  0.29
 172    9  0.07
 173   87  0.64

ACGTcount: A:0.34, C:0.16, G:0.11, T:0.37


Consensus pattern (163 bp):   
ATTTTATAATCTCATAATTAATTTTAAGTTGAACTTTTTTACATTTTTGGTCTAAAAACAGACCA
TAATTGAATGCCTACCTCAAGAAACATGAAGAAAAGGGCATTCATTGGTAAGAAAATCCCACTTA
TAATCACCCATTCTTTCAAAACCCTTATTACTC
Done.