Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402498.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5572.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 745

Length: 1242
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.17

Warning! 669 characters in sequence are not A, C, G, or T


Found at i:317 original size:171 final size:170

Alignment explanation


    Indices: 16--332  Score: 392
    Period size: 171  Copynumber: 1.9  Consensus size: 170

          6 TGTGAAAATT

                           *  *    *            *   *      *                 
         16 GATCATAATTTGATGTTTTCATTGGAAAACATGAAGTGGATGCCATCTATTGATAAAAAAGTCCA
          1 GATCATAATTTGATGATTACATTAGAAAACATGAAGCGGACGCCATCCATTGATAAAAAAGTCCA

                        *               *    *                        *      
         81 TTTATAGTCACTTATGCTATCGAAAGCCTTGTTGCTCACTTTAAATGGTTGTATAATCTTATAAA
         66 TTTATAGTCACTCATGCTATCGAAAGCCCTGTTACTCACTTTAAATGGTTGTATAATCCTATAAA

                   *                                
        146 TGATTTTGAATCAAAAAGTTTTTCATTATTAGTTAAAACA
        131 TGATTTTAAATCAAAAAGTTTTTCATTATTAGTTAAAACA

                                                        *            *       
        186 GATCAT-ATTTAGATGATTACATTAGAAAACATGAAGCGGACGCTATCCATTGACTAGAAAA-TA
          1 GATCATAATTT-GATGATTACATTAGAAAACATGAAGCGGACGCCATCCATTGA-TAAAAAAGT-

                       * *                           *                       
        249 CCATTTATAGTTAGTCATGCT-TACGAAAGCCCTGTTACTCGCTTTAAACT-GTT-TAATAATCC
         63 CCATTTATAGTCACTCATGCTAT-CGAAAGCCCTGTTACTCACTTTAAA-TGGTTGT-ATAATCC

                    *             
        311 TATAAATGCTTTTAAATCAAAA
        125 TATAAATGATTTTAAATCAAAA

        333 TATTTTTTAT


Statistics
Matches: 124,  Mismatches: 17, Indels: 11
        0.82            0.11        0.07

Matches are distributed among these distances:
 169    4  0.03
 170   44  0.35
 171   75  0.60
 172    1  0.01

ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36


Consensus pattern (170 bp):   
GATCATAATTTGATGATTACATTAGAAAACATGAAGCGGACGCCATCCATTGATAAAAAAGTCCA
TTTATAGTCACTCATGCTATCGAAAGCCCTGTTACTCACTTTAAATGGTTGTATAATCCTATAAA
TGATTTTAAATCAAAAAGTTTTTCATTATTAGTTAAAACA
Done.