Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397779.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1077.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2587
ACGTcount: A:0.15, C:0.06, G:0.05, T:0.17

Warning! 1468 characters in sequence are not A, C, G, or T


Found at i:899 original size:44 final size:44

Alignment explanation


    Indices: 845--932  Score: 149
    Period size: 44  Copynumber: 2.0  Consensus size: 44

        835 AAGCAAAAGG

                 *                                      
        845 CATTCTTTGGTAAAAAAACTCTATTTATAGTCTTATATTCCTTC
          1 CATTCGTTGGTAAAAAAACTCTATTTATAGTCTTATATTCCTTC

                                *             *         
        889 CATTCGTTGGTAAAAAAACTTTATTTATAGTCTTTTATTCCTTC
          1 CATTCGTTGGTAAAAAAACTCTATTTATAGTCTTATATTCCTTC

        933 AAAAGCCTTA


Statistics
Matches: 41,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  44   41  1.00

ACGTcount: A:0.28, C:0.17, G:0.08, T:0.47


Consensus pattern (44 bp):   
CATTCGTTGGTAAAAAAACTCTATTTATAGTCTTATATTCCTTC
Done.