Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018402526.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_560.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9150
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.28
Warning! 2082 characters in sequence are not A, C, G, or T
Found at i:1522 original size:171 final size:169
Alignment explanation
Indices: 1100--3072 Score: 1216
Period size: 171 Copynumber: 11.6 Consensus size: 169
1090 NNNATGCTTG
* * * *
1100 TTTCTTCACGTTT-CTCAAGGTAGACATTCAATTATAGTTTGTTTTAA-CAGATAATGTAAAAAA
1 TTTCCTCACGTTTCCT-AAGGTAGACATTCAATTATAGTCTGTTTTAACCA-AAAATATAAAAAA
* ********** *
1163 ATTCAATTTAAAATCAATTATGAGATTATAAAACCNNNNNNNNNNAGTAATAAGGCTTTTGAACG
64 ATTCAACTTAAAATCAATTATGAGATTATAAAA-CATTTAAAGCAAGTAATAAGGCTTTTGAAGG
* * * * * * *
1228 AATGGGTGACTGTAAAT-GAACCTTTCCTGCTAATGAATGCCT
128 AATGGGTGACTATAAATAG-ACTTTTCTTCCCAATGAATACTT
* * * * * * ********
1270 TTTCGTTCATGTTT-CTCGAGGTAAACATTCAATTATAGTTTGTTTTAACTAAAAATGNNNNNNN
1 TTTC-CTCACGTTTCCT-AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAA
*** * * *
1334 NNNCAACTTAAAATCAATTATTAGATTATAAAATCATTTAATGCAAGTAATAAGGCTTTTGAAGT
64 ATTCAACTTAAAATCAATTATGAGATTATAAAA-CATTTAAAGCAAGTAATAAGGCTTTTGAAGG
* * * ***
1399 AATGGGTGACTATGAATGGACTTTTTTTGTTAATGAATACCTT
128 AATGGGTGACTATAAATAGACTTTTCTTCCCAATGAATA-CTT
* ** * * * *
1442 TTTCTTCACGTTTCCTGTGGTAGACAATCAATTATAGTCTGTTTTACCCAAAAATGTAAAAGAAT
1 TTTCCTCACGTTTCCTAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAAT
* * * * * * * **
1507 TTAACTTATAATCAATTATGAGATTATAGAACAGTTTAACGCGAGTAATAAGACTTTTCAAAAAA
66 TCAACTTAAAATCAATTATGAGATTATAAAACA-TTTAAAGCAAGTAATAAGGCTTTTGAAGGAA
* * *
1572 TGGGTGACTATAAAT-GCACTTTTTTTCTCAATGAATGGCTT
130 TGGGTGACTATAAATAG-ACTTTTCTTCCCAATGAAT-ACTT
* * * * * * * * * * *
1613 GTTCCACACGTTTCTTGAGGTAAACATTCAATTATAATCGGTTTTAACAAAAAATGTATAAAAAG
1 TTTCCTCACGTTTCCTAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAAT
* * * * *
1678 TCAACTTAAAATCAATTATTAGATTATTAAACTAATTAAAG-ATGGTAATAAGGCATTTGAAGGA
66 TCAACTTAAAATCAATTATGAGATTATAAAAC-ATTTAAAGCA-AGTAATAAGGCTTTTGAAGGA
* * * *
1742 ATGAGTGACTATAAATAGACTTTTCTTACAAATGAATGTCTT
129 ATGGGTGACTATAAATAGACTTTTCTTCCCAATGAAT-ACTT
* * * * *
1784 TTTCTTTACGTTTCTTAAGGTAGACATTTAATTAGAG-CATGTTTTAA-CAAAAACTATAAAAAA
1 TTTCCTCACGTTTCCTAAGGTAGACATTCAATTATAGTC-TGTTTTAACCAAAAA-TATAAAAAA
********** * *
1847 ATTCAACTTAAAATCAATTATGAGACTNNNNNNNNNNTTAACGCAAGTAATAAGGCTTTTGAAAG
64 ATTCAACTTAAAATCAATTATGAGA-TTATAAAACATTTAAAGCAAGTAATAAGGCTTTTGAAGG
* * *
1912 AATGGATGATTATAAATAGACTTTTCTTCTCAATGAATGACTT
128 AATGGGTGACTATAAATAGACTTTTCTTCCCAATGAAT-ACTT
* * * * ** *
1955 GTTCCACACGTTT-TTCAAGATAGGTATTAAATTATAGTCTGTTTTAACCAAAAATATAAAAAAA
1 TTTCCTCACGTTTCCT-AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAA
* * *
2019 TTCATCTTAAAATCAATTAGGAGATTATAAAACAATTTAAAGCAAGTAATAAAGCTTTTGAAGGA
65 TTCAACTTAAAATCAATTATGAGATTATAAAAC-ATTTAAAGCAAGTAATAAGGCTTTTGAAGGA
* * * *
2084 ATGAGTGACTATAACTAGACTTTTCTTGCCAATGAAAACCTT
129 ATGGGTGACTATAAATAGACTTTTCTTCCCAATGAATA-CTT
* * * * * * * * *
2126 TTTCTTCATG-TTGCTCAAAGTAGACATTCAATTATAGCCTATTTTAACCCATAATGTAAAACAA
1 TTTCCTCACGTTTCCT-AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAA-AA
* * * *
2190 ATT-GACTTAAAATCAAATATGAGATTATAAAAGAATTTAAAGCGAA-TAATAAGACTTTTGAAG
64 ATTCAACTTAAAATCAATTATGAGATTATAAAA-CATTTAAAGC-AAGTAATAAGGCTTTTGAAG
* * * *
2253 GAATCGGTGACAATAAATGGACTTTTTTTCCCAATGAATACTT
127 GAATGGGTGACTATAAATAGACTTTTCTTCCCAATGAATACTT
* * *
2296 TTTGCCTCATGTTTCTCTAA-GTAGGCATTAAATTATAGTCTGTTTTAACCAAAAATATAAAAAA
1 TTT-CCTCACGTTTC-CTAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAA
* ********** * * *
2360 ATTTANNNNNNNNNNAATTATGAGATTATAAAACCATTTAAAGCGAGTCATAAGGC-TTTAAAGG
64 ATTCAACTTAAAATCAATTATGAGATTATAAAA-CATTTAAAGCAAGTAATAAGGCTTTTGAAGG
* ********** *
2424 AATGGGAGAAC-ATAAAT-GAACTTTTCNNNNNNNNNNATGCTT
128 AATGGGTG-ACTATAAATAG-ACTTTTCTTCCCAATGAATACTT
* * * * * *
2466 GTTTCTTCAAGTTT-CTCAAGGTAGACATTCAATCAGAGTCTGTTTTAACTAAAAATGTAAAAAA
1 -TTTCCTCACGTTTCCT-AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAA
* ********* * * *
2530 AATTCAACTAAAAATCAATTATGAGANNNNNNNNNNATTTAAAGCGAGTAATAAGACTTTTGAAA
63 AATTCAACTTAAAATCAATTATGAGA-TTATAAAACATTTAAAGCAAGTAATAAGGCTTTTGAAG
* * ** * *
2595 AAATGAGTGACTATAAATAGACTTTTCTTCAAAAAGAATGCCTT
127 GAATGGGTGACTATAAATAGACTTTTCTTCCCAATGAAT-ACTT
* * * * *********
2639 TCTCTTCACGTTTCATGAGGTAGACATTCAATTATAG-CTTGTTTTAACCAAAAATNNNNNNNNN
1 TTTCCTCACGTTTCCTAAGGTAGACATTCAATTATAGTC-TGTTTTAACCAAAAATATAAAAAAA
* * * ** * * ** * *
2703 NTCAACTTAAAATTAATTATGAGACTATAAAACTATTTAACCCGAGCAATAAAACTTTTCAAGAA
65 TTCAACTTAAAATCAATTATGAGATTATAAAAC-ATTTAAAGCAAGTAATAAGGCTTTTGAAGGA
* * * * *
2768 ATGGGTCACTATAAGTGGACTTTTCTTCTCAATGAATGGCTT
129 ATGGGTGACTATAAATAGACTTTTCTTCCCAATGAAT-ACTT
* * * ***
2810 GTTCCACACGTTT-TTCAACACAGACATTCAATTATAGTCTGTTTTAA-CAAAAATAGTAAAAAA
1 TTTCCTCACGTTTCCT-AAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATA-TAAAAAA
* * ** *
2873 ATTCAACTTAAAATCAATTATGAAATTATTAAACAATTTAAAGTGAGTAATAAGGCTTTTTAAGG
64 ATTCAACTTAAAATCAATTATGAGATTATAAAAC-ATTTAAAGCAAGTAATAAGGCTTTTGAAGG
* * * * *
2938 ATTGTGTGACTATAAATAGACTTTTCTTACAAATGAATGTCTT
128 AATGGGTGACTATAAATAGACTTTTCTTCCCAATGAAT-ACTT
* * * * * *
2981 TTTCTTCACGTTTCTTGATGTAGACATTCAATTATAGCCTGTTTTAACCAAAAATGTAAAAAAAT
1 TTTCCTCACGTTTCCTAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAAT
*
3046 T-AACTTAAAATCAATTATGAGACTATA
66 TCAACTTAAAATCAATTATGAGATTATA
3073 NNNNNNNNNN
Statistics
Matches: 1373, Mismatches: 382, Indels: 96
0.74 0.21 0.05
Matches are distributed among these distances:
168 2 0.00
169 3 0.00
170 132 0.10
171 1117 0.81
172 112 0.08
173 7 0.01
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.34
Consensus pattern (169 bp):
TTTCCTCACGTTTCCTAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAAT
TCAACTTAAAATCAATTATGAGATTATAAAACATTTAAAGCAAGTAATAAGGCTTTTGAAGGAAT
GGGTGACTATAAATAGACTTTTCTTCCCAATGAATACTT
Found at i:5999 original size:170 final size:172
Alignment explanation
Indices: 5823--6193 Score: 430
Period size: 171 Copynumber: 2.2 Consensus size: 172
5813 ATAATATCAT
* * * * *
5823 AATTGATTTTAAG-TCAATTTGTTTTACATTAATGGTT-AAATAGGCTATAATTGAATATCTAG-
1 AATTGATTTTAAGTTGAATTTGTTTTACATTAATGATTAAAACAGACTATAATTGAAT-GCTAGC
* * * *
5885 TTTAAGAAACATAAAGAA-AGAGGCATTTATTGACAAGAAAAGTCAATTTATAGTCACCCATTCT
65 CTTAAGAAACATAAAGAACA-AGCCATTCATTGACAAGAAAAGTCAATTTATAATCACCCATTCT
* * *
5949 TTCAAAAGCCGTATTACTTGCTTTAAATTATTTTATAAACTCAA
129 TTCAAAAGCCATATTACTAGCGTTAAATTATTTTATAAACTCAA
* ** *
5993 AATTGATTTTAAGTTGAATTT-TTTTCCATTTTTGATTAAAACAGACTATAATTGAATGCTTGCC
1 AATTGATTTTAAGTTGAATTTGTTTTACATTAATGATTAAAACAGACTATAATTGAATGCTAGCC
* * ** * * *
6057 TTCAGAAACGTATGGAACAAGCCATTCATTGAGAGGAAAAGTCCATTTATAATCACCCATTCTTT
66 TTAAGAAACATAAAGAACAAGCCATTCATTGACAAGAAAAGTCAATTTATAATCACCCATTCTTT
* * ** *
6122 TAAAAGCCATATTACTAGCGTTAAATTGTTTTATAGTCTCAT
131 CAAAAGCCATATTACTAGCGTTAAATTATTTTATAAACTCAA
6164 AATTGATTTTAAGTTGAA-TTGTTTTACATT
1 AATTGATTTTAAGTTGAATTTGTTTTACATT
6194 TNNNNNNNNN
Statistics
Matches: 167, Mismatches: 29, Indels: 9
0.81 0.14 0.04
Matches are distributed among these distances:
170 30 0.18
171 136 0.81
172 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.39
Consensus pattern (172 bp):
AATTGATTTTAAGTTGAATTTGTTTTACATTAATGATTAAAACAGACTATAATTGAATGCTAGCC
TTAAGAAACATAAAGAACAAGCCATTCATTGACAAGAAAAGTCAATTTATAATCACCCATTCTTT
CAAAAGCCATATTACTAGCGTTAAATTATTTTATAAACTCAA
Found at i:7638 original size:169 final size:168
Alignment explanation
Indices: 6958--8364 Score: 819
Period size: 171 Copynumber: 8.3 Consensus size: 168
6948 TTGAGAAATG
* *
6958 TGAAGAAAAAGACATTCATTGGTAA-AAAAGTCTATTTATAGACATCCATTCCTTCAAAAGCCTT
1 TGAAGAAAAAGACATTCATTGGTAAGAAAAGTCCATTTATAGTCA-CCATT-CTTCAAAAGCCTT
** * ********** * *
7022 ATTA-CTCACTTTAAATGGTTTTNNNNNNNNNNAATTAATTTTAAGTTGAATGTTTTTACATTTT
64 ATTATCTTGC-TTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTT
* * ** * *
7086 TAGTTAAAATAGACTACAATTGAATGCCGACCTTAAGAAACG
128 TAATTAAAACAGACTACAATTGAATG-TTACCTCAAGAAACA
** * * * *
7128 TGTTGAAAAAGTCATTCATTAAG-AAGAAAAGCCCATTTATAGTCAACCACTCCTTCAAAAGCCT
1 TGAAGAAAAAGACATTCATT-GGTAAGAAAAGTCCATTTATAGTC-ACCA-TTCTTCAAAAGCCT
* * * * * * *
7192 TATTA-CTTGCTTTTAATTGTTTTATAATTTCATAATTGATTTTAAATGGAATTTGTTAATATTT
63 TATTATCTTGC-TTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTT
* *
7256 TTGATTAAAATAGAC-ACTAATTGAATGTGTACCTCAAGAAACA
127 TTAATTAAAACAGACTAC-AATTGAATGT-TACCTCAAGAAACA
* * * *
7299 TGAAGAAAAACACATTCACTGGTAAGAAAAATCTATTTATAGTCATCCATTCTTTCAAAAGCCTT
1 TGAAGAAAAAGACATTCATTGGTAAGAAAAGTCCATTTATAGTCA-CCATTC-TTCAAAAGCCTT
* * *
7364 ATT-TCTTGCTTTAAATTGTTTTATAATCTCATAATTGTTTTTAAATTAAATTTTTTTACATTTT
64 ATTATCTTGC-TTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTT
** * * *********
7428 TTGTTAAAACAGACAATAATTGAATNNNNNNNNNNAGAAACA
128 TAATTAAAACAGACTACAATTGAAT-GTTACCTCAAGAAACA
* *
7470 TGAAGAAACAAG-CATTCATTGGTAAGAAAAGTCCATTCATAGTCTCTCATTACTTCAAAAGCCT
1 TGAAGAAA-AAGACATTCATTGGTAAGAAAAGTCCATTTATAGTCAC-CATT-CTTCAAAAGCCT
* * * * *
7534 TATTAT-TTAC-TAAATGGTTTTATAATGTCAAAATTGATTTTAAGTTGAATATTTTTACATTTT
63 TATTATCTTGCTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTT
* * *
7597 TAATTAAAACAAATTACAATTGAATGCTTACCTCGAGAAACA
128 TAATTAAAACAGACTACAATTGAATG-TTACCTCAAGAAACA
* * * * * *
7639 TGTA-AAAAAGCCATTCATTGAGAAAAAAAAGTCCATTCATAGTCACCCATCCTTCAAAAGCCTT
1 TGAAGAAAAAGACATTCATTG-GTAAGAAAAGTCCATTTATAGTCA-CCATTCTTCAAAAGCCTT
* * * *
7703 ATTACTCATT--TTTAATTATTTTACAATCTCATAATTGATTTTAAGTTGAATTTTTTTATATTT
64 ATTA-TC-TTGCTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTT
* * * **
7766 TGT--TTAAAACAGACTATAATTGACA-GTCTACATCGAGAAATG
127 T-TAATTAAAACAGACTACAATTGA-ATGT-TACCTCAAGAAACA
* ** *
7808 TGGAGAAAAAGACATTCATTGACAAGAAAAGTTCATTTATAGTCACCTATTCTTTCAAAAGCCTT
1 TGAAGAAAAAGACATTCATTGGTAAGAAAAGTCCATTTATAGTCACC-ATTC-TTCAAAAGCCTT
******************
7873 ANNNNNNNNNNNNNNNNNNTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTTACATTTT
64 ATTATCTTGCTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAA-TTTTTTTACATTTT
* * * **
7938 TCATTAAAGCAGACTACAATTGAATGTCTGCCTCAAGAAATG
128 TAATTAAAACAGACTACAATTGAATGT-TACCTCAAGAAACA
* * * * * *
7980 GGTAGAAAAA-ACCATTCATTGAG-AAAAAAAGTCAATTTATTGTCATCCATTTCTTCAAAAACC
1 TGAAGAAAAAGA-CATTCATTG-GTAAGAAAAGTCCATTTATAGTCA-CCA-TTCTTCAAAAGCC
**********
8043 TTATTAATC--GCTTTAAATTGTTTTATAATCTCNNNNNNNNNNTTAAGTTGAATTTTTTTACAT
62 TTATT-ATCTTGC-TTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACAT
** * * *
8106 TTTTGGTTGAAAA-AGACTATAATTGAATTTCTA-CTTATAGAAACA
125 TTTTAATT-AAAACAGACTACAATTGAATGT-TACCTCA-AGAAACA
* ** * ********** *
8151 TGAAGAGAAACCCATTCATAGGTAAGAAANNNNNNNNNNTGGTCACCCATTCCTTCAAAAGCCTT
1 TGAAGAAAAAGACATTCATTGGTAAGAAAAGTCCATTTATAGTCA-CCATT-CTTCAAAAGCCTT
* * * * * *
8216 ATTA-CTCGCTCTAAATAGTTTTATAATCACATAATTGAGTTGAAGTTGAAATTTTTTACATTTT
64 ATTATCTTGCT-TAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTT
* * * **
8280 TGATTAAAACAGA-TAATAATTGAATATCTACCTTGAGAAACA
128 TAATTAAAACAGACT-ACAATTGAATGT-TACCTCAAGAAACA
* *
8322 AGAAGAAACAAG-CATTCATTGGCAAGAAAAGTCCATTTATAGT
1 TGAAGAAA-AAGACATTCATTGGTAAGAAAAGTCCATTTATAGT
8365 NNNNNNNNNN
Statistics
Matches: 943, Mismatches: 240, Indels: 107
0.73 0.19 0.08
Matches are distributed among these distances:
167 3 0.00
168 32 0.03
169 155 0.16
170 145 0.15
171 487 0.52
172 116 0.12
173 5 0.01
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.36
Consensus pattern (168 bp):
TGAAGAAAAAGACATTCATTGGTAAGAAAAGTCCATTTATAGTCACCATTCTTCAAAAGCCTTAT
TATCTTGCTTAAATTGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTACATTTTTAA
TTAAAACAGACTACAATTGAATGTTACCTCAAGAAACA
Found at i:7998 original size:510 final size:511
Alignment explanation
Indices: 7054--8048 Score: 1054
Period size: 510 Copynumber: 1.9 Consensus size: 511
7044 NNNNNNNNNN
* * * *
7054 AATTAATTTTAAGTTGAATGTTTTTACATTTTTAGTTAAAATAGACTACAATTGAATGCCGACCT
1 AATTAATTTTAAGTTGAATATTTTTACATTTTTAATTAAAACAAACTACAATTGAATGCCGACCT
* * * * * *
7119 TAAGAAACGTGTTGAAAAAGTCATTCATTAAGAAGAAAAGCCCATTTATAGTCAACCACTCCTTC
66 CAAGAAACATGTTAAAAAAGCCATTCATTAAGAAAAAAAGCCCATTCATAGTCAACCACTCCTTC
** * * *
7184 AAAAGCCTTATTACTTGCTTTTAATTGTTTTATAATTTCATAATTGATTTTAAATGGAATTTGTT
131 AAAAGCCTTATTACTCACTTTTAATTATTTTACAATCTCATAATTGATTTTAAATGGAATTTGTT
* * *
7249 AATATTTTTGATTAAAATAGACACTAATTGAATGTGTACCTCAAGAAACATGAAGAAAAACACAT
196 AATATTTTTGATTAAAACAGACACTAATTGAATGTCTACATCAAGAAACATGAAGAAAAACACAT
**
7314 TCACTGGTAAGAAAAATCTATTTATAGTCATCCATTCTTTCAAAAGCCTTATTTCTTGCTTTAAA
261 TCACTGACAAGAAAAATCTATTTATAGTCATCCATTCTTTCAAAAGCCTTATTTCTTGCTTTAAA
* **
7379 TTGTTTTATAATCTCATAATTGTTTTTAAATTAAATTTTTTTACATTTTTTGTTAAAACAGACAA
326 TTGTTTTATAATCTCATAATTGATTTTAAATTAAATTTTTTTACATTTTTCATTAAAACAGACAA
* ********** * * * * *
7444 TAATTGAATNNNNNNNNNNAGAAACATGAAGAAACAAGCATTCATTG-GTAAGAAAAGTCCATTC
391 CAATTGAATGTCTGCCTCAAGAAACAGGAAGAAAAAACCATTCATTGAG-AAAAAAAGTCAATTC
*
7508 ATAGTC-TCTCATTACTTCAAAAGCCTTATTATTTACTAAATGGTTTTATAATGTCAA
455 ATAGTCATC-CATTACTTCAAAAACCTTATTATTTACTAAATGGTTTTATAATGTCAA
* * **
7565 AATTGATTTTAAGTTGAATATTTTTACATTTTTAATTAAAACAAATTACAATTGAATGCTTACCT
1 AATTAATTTTAAGTTGAATATTTTTACATTTTTAATTAAAACAAACTACAATTGAATGCCGACCT
* * * *
7630 CGAGAAACATG-TAAAAAAGCCATTCATTGAGAAAAAAAAGTCCATTCATAGTCACCCA-TCCTT
66 CAAGAAACATGTTAAAAAAGCCATTCATTAAG-AAAAAAAGCCCATTCATAGTCAACCACTCCTT
* * * *
7693 CAAAAGCCTTATTACTCATTTTTAATTATTTTACAATCTCATAATTGATTTTAAGTTGAATTTTT
130 CAAAAGCCTTATTACTCACTTTTAATTATTTTACAATCTCATAATTGATTTTAAATGGAATTTGT
* * * ** * *
7758 TTATA-TTTTGTTTAAAACAGACTA-TAATTGACA-GTCTACATCGAGAAATGTGGAGAAAAAGA
195 TAATATTTTTGATTAAAACAGAC-ACTAATTGA-ATGTCTACATCAAGAAACATGAAGAAAAACA
* * *********
7820 CATTCATTGACAAGAAAAGT-TCATTTATAGTCA-CCTATTCTTTCAAAAGCCTTANNNNNNNNN
258 CATTCACTGACAAGAAAAATCT-ATTTATAGTCATCC-ATTCTTTCAAAAGCCTTATTTCTTGCT
********* * * *
7883 NNNNNNNNNTTTATAATCTCATAATTGATTTTAAGTTGAATTTTTTTTACATTTTTCATTAAAGC
321 TTAAATTGTTTTATAATCTCATAATTGATTTTAAATT-AAATTTTTTTACATTTTTCATTAAAAC
* ** *
7948 AGACTACAATTGAATGTCTGCCTCAAGAAATGGGTAGAAAAAACCATTCATTGAGAAAAAAAGTC
385 AGACAACAATTGAATGTCTGCCTCAAGAAACAGGAAGAAAAAACCATTCATTGAGAAAAAAAGTC
* * *
8013 AATTTATTGTCATCCATTTCTTCAAAAACCTTATTA
450 AATTCATAGTCATCCATTACTTCAAAAACCTTATTA
8049 ATCGCTTTAA
Statistics
Matches: 387, Mismatches: 89, Indels: 17
0.78 0.18 0.03
Matches are distributed among these distances:
508 3 0.01
509 115 0.30
510 179 0.46
511 90 0.23
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.37
Consensus pattern (511 bp):
AATTAATTTTAAGTTGAATATTTTTACATTTTTAATTAAAACAAACTACAATTGAATGCCGACCT
CAAGAAACATGTTAAAAAAGCCATTCATTAAGAAAAAAAGCCCATTCATAGTCAACCACTCCTTC
AAAAGCCTTATTACTCACTTTTAATTATTTTACAATCTCATAATTGATTTTAAATGGAATTTGTT
AATATTTTTGATTAAAACAGACACTAATTGAATGTCTACATCAAGAAACATGAAGAAAAACACAT
TCACTGACAAGAAAAATCTATTTATAGTCATCCATTCTTTCAAAAGCCTTATTTCTTGCTTTAAA
TTGTTTTATAATCTCATAATTGATTTTAAATTAAATTTTTTTACATTTTTCATTAAAACAGACAA
CAATTGAATGTCTGCCTCAAGAAACAGGAAGAAAAAACCATTCATTGAGAAAAAAAGTCAATTCA
TAGTCATCCATTACTTCAAAAACCTTATTATTTACTAAATGGTTTTATAATGTCAA
Done.