Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402529.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5602.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 882

Length: 1470
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30


Found at i:317 original size:16 final size:16

Alignment explanation


    Indices: 296--328  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        286 TGATCTCAAA

                            
        296 GGAAGAAGAAATTGAG
          1 GGAAGAAGAAATTGAG

                            
        312 GGAAGAAGAAATTGAG
          1 GGAAGAAGAAATTGAG

             
        328 G
          1 G

        329 TAACTTCTAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.48, C:0.00, G:0.39, T:0.12


Consensus pattern (16 bp):   
GGAAGAAGAAATTGAG
Done.