Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402534.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5607.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.12, C:0.35, G:0.39, T:0.13


Found at i:824 original size:18 final size:18

Alignment explanation


    Indices: 801--839  Score: 69
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        791 TGGGGCGTCG

                              
        801 TCGTGGTGCCGTTCGGGC
          1 TCGTGGTGCCGTTCGGGC

                         *    
        819 TCGTGGTGCCGTTGGGGC
          1 TCGTGGTGCCGTTCGGGC

               
        837 TCG
          1 TCG

        840 AGCGGTACCG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.00, C:0.26, G:0.46, T:0.28


Consensus pattern (18 bp):   
TCGTGGTGCCGTTCGGGC

Found at i:926 original size:15 final size:15

Alignment explanation


    Indices: 853--926  Score: 85
    Period size: 15  Copynumber: 4.9  Consensus size: 15

        843 GGTACCGCGG

                  *  *     
        853 CTGCGTGGTCCCCGA
          1 CTGCGTCGTGCCCGA

                        *  
        868 CTGCGTCGTGCCGGA
          1 CTGCGTCGTGCCCGA

                        *  
        883 CTGCGTCGTGCCGGA
          1 CTGCGTCGTGCCCGA

                  *  *     
        898 CTGCGTGGTCCCCGA
          1 CTGCGTCGTGCCCGA

                 *        
        913 CTGCGCCGTGCCCG
          1 CTGCGTCGTGCCCG

        927 GGTAGGCGCG


Statistics
Matches: 50,  Mismatches: 9, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  15   50  1.00

ACGTcount: A:0.05, C:0.39, G:0.36, T:0.19


Consensus pattern (15 bp):   
CTGCGTCGTGCCCGA
Done.