Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402535.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5608.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.26, C:0.11, G:0.08, T:0.25

Warning! 334 characters in sequence are not A, C, G, or T


Found at i:782 original size:172 final size:172

Alignment explanation


    Indices: 415--793  Score: 481
    Period size: 172  Copynumber: 2.2  Consensus size: 172

        405 NNNNNNNNNN

                                                                  * *        
        415 ATTGAATGTCTACCTTAAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAATTTCATTTATA
          1 ATTGAATGTCTACCTTAAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCCATTTATA

                                         * *                                 
        480 GTCACCTGAACCTTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCAAAATTGACTT
         66 GTCACCTGAACCTTCAAAAGCCTTATTACCCACTTTAAATAGTTTTATAATCTCAAAATTGACTT

                                                      
        545 AAATTTGAATTCTCTGTCCATTTTTGGTTAAAACATACTAGA
        131 AAATTTGAATTCTCTGTCCATTTTTGGTTAAAACATACTAGA

              **********                         *                         **
        587 ATNNNNNNNNNNCCTTAAGAAACATGAAGAAAAAAGTTTTCATTGGCAAGAAAAGTCCATTT-NN
          1 ATTGAATGTCTACCTTAAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCCATTTATA

            ********                                 *                       
        651 NNNNNNNNATACCTTCAAAAGCCTTATTACCCACTTTAAATGGTTTTATAATCTCAAAATTGACT
         66 GTCACCTGA-ACCTTCAAAAGCCTTATTACCCACTTTAAATAGTTTTATAATCTCAAAATTGACT

                          *                            
        716 TAAATTTGAATTCTTTGTCCATTTTTGGTTAAAACATACTAGA
        130 TAAATTTGAATTCTCTGTCCATTTTTGGTTAAAACATACTAGA

                            *          *       
        759 ATTGAATGTCTACCTTGAGAAACATGACGAAAAAA
          1 ATTGAATGTCTACCTTAAGAAACATGAAGAAAAAA

        794 ACATTCANNN


Statistics
Matches: 167,  Mismatches: 39, Indels: 2
        0.80            0.19        0.01

Matches are distributed among these distances:
 171    1  0.01
 172  166  0.99

ACGTcount: A:0.36, C:0.15, G:0.11, T:0.32


Consensus pattern (172 bp):   
ATTGAATGTCTACCTTAAGAAACATGAAGAAAAAAGTATTCATTGGCAAGAAAAGTCCATTTATA
GTCACCTGAACCTTCAAAAGCCTTATTACCCACTTTAAATAGTTTTATAATCTCAAAATTGACTT
AAATTTGAATTCTCTGTCCATTTTTGGTTAAAACATACTAGA
Done.