Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402539.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5612.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1711
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.31

Warning! 265 characters in sequence are not A, C, G, or T


Found at i:1549 original size:171 final size:169

Alignment explanation


    Indices: 1276--1711  Score: 491
    Period size: 171  Copynumber: 2.6  Consensus size: 169

       1266 AAACGTGAAC

                 *                             *  *                  *       
       1276 AAACATGCATTCATTGACAAAAAATCCATTTAGAGCCACCCATTCCTTCAAAAAGCTCATTACTC
          1 AAACAAGCATTCATTGACAAAAAATCCATTTAGAGTCAACCATTCCTTCAAAAAGCTTATTACTC

                *     *                               *  *                   
       1341 GCTTGAAATGATTTTATAATCTCATAATTGATTTTAAGGTGACTTTTTTTACATTTTTTG-TTAA
         66 GCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGGTGAATTGTTTTACA-TTTTTGATTAA

                                 *     *     *     *
       1405 AACAAACAATAATTGAATGTCTAACTCGAGAAATACGAAT
        130 AACAAACAATAATTGAATGTCCAACTCAAGAAACACGAAG

                                                                             
       1445 AAACAAGCATTCATTGACAAGAAAATTCCATTTAGAGTCAACCATTCCTTCAAAAAGCTTATTAC
          1 AAACAAGCATTCATTGACAA-AAAA-TCCATTTAGAGTCAACCATTCCTTCAAAAAGCTTATTAC

                                   **********       *                        
       1510 TCGCTTTAAATGGTTTTATAATCNNNNNNNNNNTTTTAAGTTGAATTGTTTTACATTTTTGATTA
         64 TCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGGTGAATTGTTTTACATTTTTGATTA

                 *  *              **          ** *  
       1575 AAACATACTATAATTGAATGTCCGCCTCAAGAAACGTGTAG
        129 AAACAAACAATAATTGAATGTCCAACTCAAGAAACACGAAG

               *                                       *                     
       1616 AAATAAGCATTCATTGACAAAAAAAGTCCATTTAGAGTC-ACTTATTCCTTC-AAAAGACTTATT
          1 AAACAAGCATTCATTGAC-AAAAAA-TCCATTTAGAGTCAAC-CATTCCTTCAAAAAG-CTTATT

                         *                   
       1679 ACTCGCTTTAAATAGTTTTATAATCTCATAATT
         62 ACTCGCTTTAAATGGTTTTATAATCTCATAATT


Statistics
Matches: 219,  Mismatches: 42, Indels: 10
        0.81            0.15        0.04

Matches are distributed among these distances:
 169   19  0.09
 170   17  0.08
 171  181  0.83
 172    2  0.01

ACGTcount: A:0.36, C:0.16, G:0.11, T:0.35


Consensus pattern (169 bp):   
AAACAAGCATTCATTGACAAAAAATCCATTTAGAGTCAACCATTCCTTCAAAAAGCTTATTACTC
GCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGGTGAATTGTTTTACATTTTTGATTAAA
ACAAACAATAATTGAATGTCCAACTCAAGAAACACGAAG
Done.