Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402561.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5633.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 792

Length: 1321
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31


Found at i:285 original size:170 final size:168

Alignment explanation


    Indices: 1--536  Score: 589
    Period size: 171  Copynumber: 3.1  Consensus size: 168

                      *                                      *               
          1 TTTTGAAGGCATGGGTGACTATAAATAGACTTTTC-TAGTCAATGAATGGTTTTTTCTTCATGTT
          1 TTTTGAAGGCTTGGGTGACTATAAATAGACTTTTCTTA-TCAATGAATGATTTTTTCTTCATGTT

                       *                 *  *                              * 
         65 TC-CTAAGACAAACATTCAATTATAATCTGTTCTAATCAAAAATGTAAAAAATTTAACTTAAATT
         65 TCTC-AAGACAGACATTCAATTATAATCTATTTTAATCAAAAATGTAAAAAATTTAACTTAAAAT

            *         *                               
        129 TAATTATGCATTTATAAAACAATTTAAAGCGAGTAATAAGGC
        129 CAATTATG-AATTATAAAACAATTTAAA-CGAGTAATAAGGC

                   *       *                           *      **             
        171 TTTTGAACGCTTGGGCGACTATAAAT-GAACTTTTCTTATCAAGGAATGACCTTTTCTTCATGTT
          1 TTTTGAAGGCTTGGGTGACTATAAATAG-ACTTTTCTTATCAATGAATGATTTTTTCTTCATGTT

                 *  *                                   *              *     
        235 TCTCATGATAGACAGTT-AATTATAATCTATTTTAATCAAAAATCTAAAAAAATTTAACCTAAAA
         65 TCTCAAGACAGACA-TTCAATTATAATCTATTTTAATCAAAAATGT-AAAAAATTTAACTTAAAA

                      **         *         *           
        299 TCAATTATGTGCTTATAAAACCATTTAAAACAAGTAATAAGGC
        128 TCAATTATG-AATTATAAAACAATTT-AAACGAGTAATAAGGC

                     *       *                    *          *               
        342 TTTTGAA-GATATGGGTAACTATAAATAGACTTTTCTTGTCAATGAATGTTTTTTTCTTCACTGT
          1 TTTTGAAGGCT-TGGGTGACTATAAATAGACTTTTCTTATCAATGAATGATTTTTTCTTCA-TGT

                    *    *                      *             **   *         
        406 TT-TCAAGGCAGATATTCAATTATAATCTATTTTAACCAAAAATGTATAACTATTCAACTTAAAA
         64 TTCTCAAGACAGACATTCAATTATAATCTATTTTAATCAAAAATGTA-AAAAATTTAACTTAAAA

                           *    **                     
        470 TCAATTATGAGATTAGAAAAGTATTTAACACGAGTAATAAGGC
        128 TCAATTATGA-ATTATAAAACAATTTAA-ACGAGTAATAAGGC

               *                    
        513 TTTCGAAGGCTTGGGTGACTATAA
          1 TTTTGAAGGCTTGGGTGACTATAA

        537 GTGGGCTTTT


Statistics
Matches: 304,  Mismatches: 48, Indels: 27
        0.80            0.13        0.07

Matches are distributed among these distances:
 169    1  0.00
 170   93  0.31
 171  199  0.65
 172   11  0.04

ACGTcount: A:0.38, C:0.13, G:0.13, T:0.37


Consensus pattern (168 bp):   
TTTTGAAGGCTTGGGTGACTATAAATAGACTTTTCTTATCAATGAATGATTTTTTCTTCATGTTT
CTCAAGACAGACATTCAATTATAATCTATTTTAATCAAAAATGTAAAAAATTTAACTTAAAATCA
ATTATGAATTATAAAACAATTTAAACGAGTAATAAGGC

Done.