Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402564.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5636.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1051
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.31

Warning! 71 characters in sequence are not A, C, G, or T


Found at i:705 original size:20 final size:20

Alignment explanation


    Indices: 654--707  Score: 65
    Period size: 20  Copynumber: 2.7  Consensus size: 20

        644 TACAAAAACA

                         *      
        654 TTAAAATAAACATAAATAAC
          1 TTAAAATAAACATTAATAAC

            *               *    
        674 ATAAAACT-AACATTATTAAC
          1 TTAAAA-TAAACATTAATAAC

                          
        694 TTAAAATAAACATT
          1 TTAAAATAAACATT

        708 TAAAAAAATA


Statistics
Matches: 28,  Mismatches: 4, Indels: 4
        0.78            0.11        0.11

Matches are distributed among these distances:
  19    1  0.04
  20   26  0.93
  21    1  0.04

ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30


Consensus pattern (20 bp):   
TTAAAATAAACATTAATAAC
Done.