Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402578.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5650.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 910

Length: 1518
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.30

Warning! 243 characters in sequence are not A, C, G, or T


Found at i:299 original size:171 final size:160

Alignment explanation


    Indices: 122--439  Score: 361
    Period size: 171  Copynumber: 1.9  Consensus size: 160

        112 NNNNAAGGCT

                                               *  *     *  * *               
        122 TTCGAAGGCATGGGTAACTATAAATA-GACTTTTCTTGTCAATGGATTTTTTTTTCTTCACGTTT
          1 TTCGAAGGCATGGGTAACTATAAA-AGGACTTTTCATGCCAATGAATGTCTTTTTCTTCACGTTT

            *                           *              *                     
        186 TTCAAGGCAGACAATCAATTATAATCTGTTTTAATAAAAAATGTAAAAACA-TTCAACTTAAAAC
         65 CTCAAGGCAGACAATCAATTATAATCTGCTTTAAT-AAAAATGCAAAAA-AGTTCAACTTAAAAC

                   *                         
        250 AAATTATGAGATTAAAAAACCATTTAAAGCGAG
        128 AAATTATAAGATTAAAAAACCATTTAAAGCGAG

                                     *                                       
        283 NNNNNNNNNNTTCGAAGGCATGGGTGACTATAAAAGGACTTTTCATGCCAATGAATGTCTTTTTC
          1 ----------TTCGAAGGCATGGGTAACTATAAAAGGACTTTTCATGCCAATGAATGTCTTTTTC

                *       *   *  *  *                                          
        348 TTCATGTTTCTCGAGGTAGTCATTCAATTATAATCTGCTTTAATAAAAATGCAAAAAAGTTCAAC
         56 TTCACGTTTCTCAAGGCAGACAATCAATTATAATCTGCTTTAATAAAAATGCAAAAAAGTTCAAC

                   *                   
        413 TTAAAACTAATTATAAGATTAAAAAAC
        121 TTAAAACAAATTATAAGATTAAAAAAC

        440 NNNNNNNNNN


Statistics
Matches: 129,  Mismatches: 16, Indels: 5
        0.86            0.11        0.03

Matches are distributed among these distances:
 169    1  0.01
 170   44  0.34
 171   84  0.65

ACGTcount: A:0.37, C:0.13, G:0.13, T:0.33


Consensus pattern (160 bp):   
TTCGAAGGCATGGGTAACTATAAAAGGACTTTTCATGCCAATGAATGTCTTTTTCTTCACGTTTC
TCAAGGCAGACAATCAATTATAATCTGCTTTAATAAAAATGCAAAAAAGTTCAACTTAAAACAAA
TTATAAGATTAAAAAACCATTTAAAGCGAG
Done.