Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402585.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5657.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2290
ACGTcount: A:0.24, C:0.07, G:0.09, T:0.23

Warning! 823 characters in sequence are not A, C, G, or T


Found at i:1145 original size:171 final size:167

Alignment explanation


    Indices: 626--1145  Score: 445
    Period size: 171  Copynumber: 3.0  Consensus size: 167

        616 AACGAGTGTG

                                       * * *               *  *              
        626 TTTTTCTTCACGTTTCCTTAA-GTAAAAACTGAATTATAGTCTGTTTGAACCAAAAATGTAAAAC
          1 TTTTTCTTCACGTTT-CTTAAGGT-AACATTCAATTATAGTCTGTTTTAATCAAAAATGTAAAAC

                  *  *     *          *       *        * *        *         *
        690 AATTTATCTTAAAATTAATTATGAGAGTATAAAATAATTTAAAACAAGTAATAAGGCTTTTGAGG
         64 AATTTAACTAAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAACGCTTTTGA-A

                    *  *         *    *  *            
        755 GAATGGGTGACAATAAATGGATTTTTTTTTTCAATGAATGGC
        128 GAATGGGTAACTATAAAT-GACTTTTCTTCTCAATGAAT-GC

                      *      *                       *           *           
        797 TTTTTCTTCATGTTTCTCAAGGTAAGCATTCAATTATAGTCCG-TTTAATCATTAAATGT-AAAC
          1 TTTTTCTTCACGTTTCTTAAGGTAA-CATTCAATTATAGTCTGTTTTAATCA-AAAATGTAAAAC

                      *        *   *      *                        ********* 
        860 AATTGTAACTGAAAATCAAGTATAAGATTACAAAACAATTTAAAGCGAGTAATANNNNNNNNNNA
         64 AATT-TAACTAAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATA-ACGCTTTTGA

                 *                           *         *
        925 AGAATAGGTAACTATAAATGCACTTTTCTTAC-AAATGAATGTG
        127 AGAATGGGTAACTATAAATG-ACTTTTCTT-CTCAATGAATG-C

                       *                            *         *            * 
        968 TTTTTCTTCACATTTCTTAAGGTAGACATTCAATTATAGTATGTTTTAATGAAAAATGTAAAAAA
          1 TTTTTCTTCACGTTTCTTAAGGTA-ACATTCAATTATAGTCTGTTTTAATCAAAAATGTAAAACA

             *                                     **  *                     
       1033 AATTAACTAAAAATCAATTATGAGATTATAAAACAATTTCGAGTGAGTAATAACGCTTTTGAAGA
         65 ATTTAACTAAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAACGCTTTTGAAG-

                                                     
       1098 AATGGGTAACTATAAATAGACTTTTCTTCTCAATGAATAGC
        129 AATGGGTAACTATAAAT-GACTTTTCTTCTCAATGAAT-GC

                   
       1139 TTTTTCT
          1 TTTTTCT

       1146 NNNNNNNNNN


Statistics
Matches: 269,  Mismatches: 65, Indels: 30
        0.74            0.18        0.08

Matches are distributed among these distances:
 170   26  0.10
 171  226  0.84
 172   17  0.06

ACGTcount: A:0.39, C:0.11, G:0.13, T:0.36


Consensus pattern (167 bp):   
TTTTTCTTCACGTTTCTTAAGGTAACATTCAATTATAGTCTGTTTTAATCAAAAATGTAAAACAA
TTTAACTAAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAACGCTTTTGAAGAA
TGGGTAACTATAAATGACTTTTCTTCTCAATGAATGC
Done.