genome.fa.s5335.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018402588.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_566.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26102

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49--1090	172	6.1	170	78	7	929	35	13	12	38	1.82
248--1090	343	2.5	341	83	3	1034	37	13	11	37	1.81
1558--2312	171	4.4	168	77	7	667	36	13	13	36	1.84
3981--4580	172	3.5	171	79	3	659	36	12	14	36	1.84
4450--4731	153	1.9	151	81	4	352	35	12	14	37	1.84
4082--5075	496	2.0	494	80	3	1093	35	13	14	36	1.86
8980--10186	171	7.0	171	76	6	893	36	13	13	36	1.84
9238--10186	343	2.8	342	82	4	1002	37	12	12	36	1.82
10720--12180	344	4.3	342	78	6	1346	36	14	13	36	1.85
10778--12180	172	8.2	169	75	9	923	35	14	13	35	1.86
13381--13428	17	2.7	18	90	6	80	27	6	12	54	1.61
13833--14145	172	1.8	171	82	5	398	35	14	11	38	1.82
17640--17687	17	2.7	18	93	3	80	52	14	6	27	1.66
17634--17951	172	1.9	162	77	12	315	34	14	14	32	1.87
19214--19628	172	2.4	171	78	7	430	34	14	13	37	1.86
19954--20324	172	2.2	171	80	7	430	36	12	15	35	1.86
21109--21728	172	3.6	171	76	5	588	34	12	15	36	1.86
21105--21799	344	2.0	344	86	2	957	34	12	15	36	1.85
21912--22791	170	5.2	169	73	6	569	35	12	14	35	1.84
24567--25241	172	3.9	171	77	9	602	36	13	13	37	1.83

Tables:   1

The End!