Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402595.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5666.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 981

Length: 1635
ACGTcount: A:0.13, C:0.05, G:0.04, T:0.14

Warning! 1040 characters in sequence are not A, C, G, or T


Found at i:1403 original size:21 final size:21

Alignment explanation


    Indices: 1377--1416  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1367 GAAAAACATG

                     *           
       1377 AAGAAAAAGGTATTTATTGGT
          1 AAGAAAAAGCTATTTATTGGT

                    *          
       1398 AAGAAAAATCTATTTATTG
          1 AAGAAAAAGCTATTTATTG

       1417 TCACCCATGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.45, C:0.03, G:0.17, T:0.35


Consensus pattern (21 bp):   
AAGAAAAAGCTATTTATTGGT
Done.