Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402601.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5672.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1844
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.24

Warning! 140 characters in sequence are not A, C, G, or T


Found at i:945 original size:34 final size:34

Alignment explanation


    Indices: 900--968  Score: 111
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        890 ACCCATGTAT

                          *                   
        900 TGAGCTGCTAGAAATTTTAGCTTTCCCTCCCAAA
          1 TGAGCTGCTAGAAACTTTAGCTTTCCCTCCCAAA

                  *                       *   
        934 TGAGCTTCTAGAAACTTTAGCTTTCCCTCCGAAA
          1 TGAGCTGCTAGAAACTTTAGCTTTCCCTCCCAAA

             
        968 T
          1 T

        969 CTTTTGGAGG


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  34   32  1.00

ACGTcount: A:0.26, C:0.26, G:0.14, T:0.33


Consensus pattern (34 bp):   
TGAGCTGCTAGAAACTTTAGCTTTCCCTCCCAAA

Found at i:1047 original size:15 final size:15

Alignment explanation


    Indices: 964--1043  Score: 135
    Period size: 15  Copynumber: 5.3  Consensus size: 15

        954 CTTTCCCTCC

                           
        964 GAAATCTTTTGGAGG
          1 GAAATCTTTTGGAGG

                           
        979 GAAATCTTTTGGAGG
          1 GAAATCTTTTGGAGG

                           
        994 GAAATCTTTTGGAGG
          1 GAAATCTTTTGGAGG

                            
       1009 GAAATGC-TTTGGAGG
          1 GAAAT-CTTTTGGAGG

                 *         
       1024 GAAATATTTTGGAGG
          1 GAAATCTTTTGGAGG

                 
       1039 GAAAT
          1 GAAAT

       1044 ATTTGGGGAA


Statistics
Matches: 62,  Mismatches: 1, Indels: 4
        0.93            0.01        0.06

Matches are distributed among these distances:
  15   61  0.98
  16    1  0.02

ACGTcount: A:0.30, C:0.05, G:0.34, T:0.31


Consensus pattern (15 bp):   
GAAATCTTTTGGAGG
Done.