Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018402628.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_57.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51493

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1067--1545
172
2.8
170
83
3
572
34
11
15
35
1.84
3135--3166
16
1.9
17
93
6
57
31
0
3
65
1.08
11232--11720
172
2.9
161
80
9
423
36
9
12
37
1.75
13605--13935
169
1.9
171
83
4
429
36
13
10
39
1.80
17033--17751
171
4.2
170
79
2
728
40
10
12
34
1.77
17099--17750
341
1.9
332
84
1
770
38
11
12
34
1.79
19552--19886
170
2.0
171
82
2
415
36
12
10
37
1.78
21195--21516
169
2.0
161
84
3
346
34
11
10
40
1.75
28417--28834
171
2.4
172
79
2
482
37
14
11
35
1.81
32982--33505
171
3.1
168
77
5
539
38
11
14
34
1.81
36860--37378
171
3.0
169
84
2
628
35
12
10
39
1.78
38067--38383
170
1.9
158
85
2
330
35
9
11
36
1.75
38276--38308
16
2.1
16
88
11
50
27
0
0
72
0.85
41930--42320
171
2.3
171
81
2
437
37
11
13
35
1.80
41994--42465
171
2.8
159
77
10
381
34
10
11
38
1.77
43079--43766
171
4.0
169
78
3
662
36
11
10
36
1.77
44111--44577
171
2.7
168
75
6
415
36
11
11
37
1.78

Tables:   1

The End!