Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402635.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5705.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1168
ACGTcount: A:0.21, C:0.08, G:0.07, T:0.24

Warning! 471 characters in sequence are not A, C, G, or T


Found at i:50 original size:16 final size:16

Alignment explanation


    Indices: 29--67  Score: 78
    Period size: 16  Copynumber: 2.4  Consensus size: 16

         19 GAAAAAAATA

                            
         29 CATTTATTGGCAAGTC
          1 CATTTATTGGCAAGTC

                            
         45 CATTTATTGGCAAGTC
          1 CATTTATTGGCAAGTC

                   
         61 CATTTAT
          1 CATTTAT

         68 AATTGAATCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   23  1.00

ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41


Consensus pattern (16 bp):   
CATTTATTGGCAAGTC
Done.