Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397792.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1091.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1766
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.29

Warning! 351 characters in sequence are not A, C, G, or T


Found at i:688 original size:170 final size:171

Alignment explanation


    Indices: 506--857  Score: 429
    Period size: 170  Copynumber: 2.1  Consensus size: 171

        496 NNNNNNNNNN

                                   *                                     *   
        506 AAAACCATTTAAAGCGAGTAATATGAATTTTAAAAGATTGACAGGCTATAAATAGACTTTTGTTC
          1 AAAACCATTTAAAGCGAGTAATAAGAATTTTAAAAGATTGACAGGCTATAAATAGACTTTTCTTC

                         * *      *              * *   *                     
        571 CCAATGGATGCTTTTTTCTTTGCT-TTTCTTAAGGAAGATATTGAAATACAGTCTGTTTTAACTA
         66 CCAATGGATGCTTATGTCTTT-ATATTTCTTAAGGAACACATTCAAATACAGTCTGTTTTAACTA

                                                      
        635 AAAAAGT-AAAAAATTCAACTTAAAATCAATTATGAGGTTAT
        130 AAAAAGTAAAAAAATTCAACTTAAAATCAATTATGAGGTTAT

            *    *                   **    *    **********       *          *
        676 GAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAAGNNNNNNNNNNTATAAATGGACTTTTCTTG
          1 AAAACCATTTAAAGCGAGTAATAAGAATTTTAAAAGATTGACAGGCTATAAATAGACTTTTCTTC

                                              *             *                
        741 CCAATGGATGCTTATGTCTTTATATTTCTTAAGGTACACATTCAAATATAGTCTGTTTTAACTAA
         66 CCAATGGATGCTTATGTCTTTATATTTCTTAAGGAACACATTCAAATACAGTCTGTTTTAACTAA

                           *                         
        806 AAAAGTAAAAAAATTTAACTTAAAATCAATTATGAGGTTAT
        131 AAAAGTAAAAAAATTCAACTTAAAATCAATTATGAGGTTAT

                       
        847 AAAACCATTTA
          1 AAAACCATTTA

        858 NNNNNNNNNN


Statistics
Matches: 150,  Mismatches: 30, Indels: 3
        0.82            0.16        0.02

Matches are distributed among these distances:
 169    1  0.01
 170  107  0.71
 171   42  0.28

ACGTcount: A:0.38, C:0.11, G:0.13, T:0.35


Consensus pattern (171 bp):   
AAAACCATTTAAAGCGAGTAATAAGAATTTTAAAAGATTGACAGGCTATAAATAGACTTTTCTTC
CCAATGGATGCTTATGTCTTTATATTTCTTAAGGAACACATTCAAATACAGTCTGTTTTAACTAA
AAAAGTAAAAAAATTCAACTTAAAATCAATTATGAGGTTAT
Done.