Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402657.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5725.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 661

Length: 1102
ACGTcount: A:0.32, C:0.08, G:0.09, T:0.29

Warning! 236 characters in sequence are not A, C, G, or T


Found at i:1042 original size:171 final size:171

Alignment explanation


    Indices: 517--1102  Score: 650
    Period size: 171  Copynumber: 3.4  Consensus size: 171

        507 NNNNNNNNCT

                                **     **   * *    *                         
        517 AATGGATATCTTTTTCTTCATGTTTCTCGAGGAAAACATACAATTATAATCTGTTTTAA-AAATA
          1 AATGGATATCTTTTTCTTCACATTTCTTAAGGCAGACATTCAATTATAATCTGTTTTAATAAA-A

                       *     *        *      *                       *      *
        581 AATATAAAAAAGTTCATCA-TAAAATTAATTATAAGATTAAAAAA-CTATTTAAAGCAAGTAATT
         65 AATATAAAAAAATTCA-AATTAAAATCAATTATGAGATTAAAAAATC-ATTTAAAGCGAGTAATA

                  **     *                 *            
        644 AGGCTTGCGAAGGTATGAGTGACTATAAATGGACTTTTCTTACC
        128 AGGCTTTTGAAGGCATGAGTGACTATAAATGAACTTTTCTTACC

                     *        *               * **                          *
        688 AATGGAT-TTTTTTTCTTTACATTTCTTAAGGCACATTTTCAATTATAATCTGTTTTAATAAAAT
          1 AATGGATATCTTTTTCTTCACATTTCTTAAGGCAGACATTCAATTATAATCTGTTTTAATAAAAA

                            *                            *                   
        752 ATAT-AAAAAATTCAACTTAAAA-CTAATTATGAGATTAAAAAATTATTTAAAGCGAGTAATAAG
         66 ATATAAAAAAATTCAAATTAAAATC-AATTATGAGATTAAAAAATCATTTAAAGCGAGTAATAAG

             *        *    *       *                   
        815 GGTTTTGAAGCCATGGGTGACTAGAAAT-AGACTTTTCTTACC
        130 GCTTTTGAAGGCATGAGTGACTATAAATGA-ACTTTTCTTACC

            *                               *                   *            
        857 GATGGATATCTTTTTCTTCACATTTCTTAAGGTAGACATTCAATTATAATCTATTTTAATAAAAA
          1 AATGGATATCTTTTTCTTCACATTTCTTAAGGCAGACATTCAATTATAATCTGTTTTAATAAAAA

                         *                     *                 **         *
        922 ATATAAAAAAATTTAAATTAAAATCAATTATGAG-CTAATAAAATCATTTAAAATGAGTAATAAA
         66 ATATAAAAAAATTCAAATTAAAATCAATTATGAGATTAA-AAAATCATTTAAAGCGAGTAATAAG

                                                    ** 
        986 GCTTTTGAAGGCATGAGTGAAC-ATAAATGAACTTTTCTTGTC
        130 GCTTTTGAAGGCATGAGTG-ACTATAAATGAACTTTTCTTACC

                   *            **              *             *              
       1028 AATGGATGTCTTTTTCTTCATGTTTCTTAAGGCAGATATTCAATTATAATATGTTTTAATAAAAA
          1 AATGGATATCTTTTTCTTCACATTTCTTAAGGCAGACATTCAATTATAATCTGTTTTAATAAAAA

                      
       1093 ATATAAAAAA
         66 ATATAAAAAA


Statistics
Matches: 346,  Mismatches: 58, Indels: 22
        0.81            0.14        0.05

Matches are distributed among these distances:
 169   87  0.25
 170  101  0.29
 171  154  0.45
 172    4  0.01

ACGTcount: A:0.40, C:0.10, G:0.12, T:0.37


Consensus pattern (171 bp):   
AATGGATATCTTTTTCTTCACATTTCTTAAGGCAGACATTCAATTATAATCTGTTTTAATAAAAA
ATATAAAAAAATTCAAATTAAAATCAATTATGAGATTAAAAAATCATTTAAAGCGAGTAATAAGG
CTTTTGAAGGCATGAGTGACTATAAATGAACTTTTCTTACC
Done.