Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402659.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5727.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2117
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:1057 original size:20 final size:20

Alignment explanation


    Indices: 1032--1072  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1022 GACCTTCCAG

                            *    
       1032 GAACTC-TCGATATGCTTCTT
          1 GAACTCATCG-TATGCCTCTT

                                
       1052 GAACTCATCGTATGCCTCTT
          1 GAACTCATCGTATGCCTCTT

             
       1072 G
          1 G

       1073 CACTAATACG


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  20   16  0.84
  21    3  0.16

ACGTcount: A:0.20, C:0.27, G:0.17, T:0.37


Consensus pattern (20 bp):   
GAACTCATCGTATGCCTCTT
Done.