Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402662.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_573.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4162
ACGTcount: A:0.24, C:0.08, G:0.09, T:0.22

Warning! 1550 characters in sequence are not A, C, G, or T


Found at i:3260 original size:170 final size:170

Alignment explanation


    Indices: 2946--3381  Score: 511
    Period size: 170  Copynumber: 2.6  Consensus size: 170

       2936 NNNNNNNCTT

                  *            *      *                    *         *       
       2946 TTTCTTCATGTTTCTTGAGCTAGACAATCAATTATAGTCTGTTTTAATTAAAAATGTGAAAAAAT
          1 TTTCTTTATGTTTCTTGAGGTAGACATTCAA-TATAGTCTGTTTTAACTAAAAATGTAAAAAAAT

                                                            *                
       3011 TCAACTTAAAATCAATTAT-AGTATTATAAAACAATTTAAAGCGAGTACTAAGGCTTTTAAAGGA
         65 TCAACTTAAAATCAATTATGAG-ATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTAAAGGA

                                    *             *    
       3075 ATAGAAGACTATAAATAGACTTTTGTTG-CTAATGAATGCTTG
        129 ATAGAAGACTATAAATAGACTTTTATTGTC-AATGAATACTTG

                    *        *                                   *           
       3117 TTTCTTTACGTTTCTTGGGGTAGACATTCAATATAGTCTGTTTTAACTAAAAAAGTAAAAAAATT
          1 TTTCTTTATGTTTCTTGAGGTAGACATTCAATATAGTCTGTTTTAACTAAAAATGTAAAAAAATT

              *  *                        **********                 *       
       3182 CATCTAAAAATCAATTATGAGATTATAAAANNNNNNNNNNCGAGTAATAAGGCTTTTGAAGGAAT
         66 CAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTAAAGGAAT

                  *                                  
       3247 A-AGAGGCTATAAATAGACTTTTATTGTCAATGAATACTTG
        131 AGA-AGACTATAAATAGACTTTTATTGTCAATGAATACTTG

            *                 *                    * *       *   *           
       3287 CTTCTTTATGTTTCTCT-TGGTAGACATTCAAATATAGTATCTTTTAACCAAATATGTAAAAAAA
          1 TTTCTTTATGTTTCT-TGAGGTAGACATTC-AATATAGTCTGTTTTAACTAAAAATGTAAAAAAA

                                           
       3351 TTCAACTTAAAATCAATTATGAGATTATAAA
         64 TTCAACTTAAAATCAATTATGAGATTATAAA

       3382 NNNNNNNNNN


Statistics
Matches: 225,  Mismatches: 35, Indels: 10
        0.83            0.13        0.04

Matches are distributed among these distances:
 169    1  0.00
 170  136  0.60
 171   88  0.39

ACGTcount: A:0.39, C:0.11, G:0.13, T:0.36


Consensus pattern (170 bp):   
TTTCTTTATGTTTCTTGAGGTAGACATTCAATATAGTCTGTTTTAACTAAAAATGTAAAAAAATT
CAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTAAAGGAAT
AGAAGACTATAAATAGACTTTTATTGTCAATGAATACTTG
Done.