genome.fa.s543.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397796.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1095.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31975

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1049--2130	172	6.3	171	71	8	587	34	13	11	37	1.81
1377--2141	171	4.5	170	75	7	517	34	13	11	37	1.81
3161--3474	172	1.9	161	81	0	295	35	11	11	37	1.79
5592--6146	171	3.3	169	77	3	549	38	11	14	34	1.82
7091--8441	171	7.9	170	79	5	1147	38	13	13	34	1.83
7091--8295	341	3.5	340	81	5	1163	38	12	13	34	1.83
7095--8441	512	2.6	508	79	6	1360	38	13	12	35	1.83
7095--8441	341	3.9	341	79	6	973	38	13	12	35	1.83
8665--8977	171	1.9	159	83	4	324	37	12	12	34	1.81
10916--12886	171	11.5	171	73	6	987	36	11	12	34	1.80
10916--12886	343	5.8	342	72	7	1280	36	11	12	34	1.80
13232--14210	171	5.7	169	73	7	653	35	11	14	34	1.83
15345--17178	171	10.7	169	73	5	635	36	11	14	33	1.81
16363--16813	173	2.6	172	80	1	524	36	11	16	33	1.84
18051--18651	173	3.5	173	79	1	598	35	14	9	38	1.79
20427--20932	171	3.0	171	79	6	488	34	14	11	37	1.83
23461--25596	171	12.5	171	70	4	1001	33	12	11	36	1.78
24896--25218	170	1.9	162	82	5	323	34	12	12	37	1.80
26146--26464	161	2.0	161	83	1	406	33	13	14	36	1.85
26024--26844	171	4.9	168	72	6	484	33	12	13	35	1.83
26969--27332	171	2.1	172	82	6	461	35	11	13	39	1.81
27433--27866	170	2.6	170	76	2	462	36	13	13	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28052--28463	172	2.4	172	84	3	508	34	14	10	40	1.80
29946--30404	172	2.7	171	79	2	454	34	12	12	37	1.81
31304--31975	170	3.9	170	72	7	493	33	13	11	38	1.81

Tables:   1

The End!