Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402691.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5753.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 825

Length: 1375
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.29

Warning! 285 characters in sequence are not A, C, G, or T


Found at i:310 original size:171 final size:154

Alignment explanation


    Indices: 46--357  Score: 245
    Period size: 171  Copynumber: 1.9  Consensus size: 154

         36 TTTAAAGTGA

                                     *                       *       *       
         46 ATAATAAGCCTTTTCAAGGAATACGTGACTATAAATAGACTTTTCTTGCCAATGAATTCCTTTTT
          1 ATAATAAGCCTTTTCAAGGAATACGAGACTATAAATAGACTTTTCTTGCAAATGAATACCTTTTT

              *                *               *          *      *           
        111 CTTCAAGTTTCTCGAGGTATACATTCAATTATAATGTGTTTTAAT-GAAAAATGTAAAACAATTC
         66 CTACAAGTTTCTCGAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAAATATAAAA-AATTC

                                     
        175 AACTTAAAATCAATTATGAGATTAT
        130 AACTTAAAATCAATTATGAGATTAT

                                     *     *                         *       
        200 ANNNNNNNNNNNNNNNNNTAATAAGGCTTTTGAAGGAATGA-GAGACTATAAATAGATTTTTCTT
          1 A-----------------TAATAAGCCTTTTCAAGGAAT-ACGAGACTATAAATAGACTTTTCTT

            *           **            *              *           *           
        264 TCAAAT-AACTAGGTTTTTCTACACATTTTCT-GAGGTAGATATTCAATTATAGTCTGTTTTAAT
         48 GCAAATGAA-TACCTTTTTCTACA-AGTTTCTCGAGGTAGACATTCAATTATAATCTGTTTTAAT

                              *            
        327 AAAAAAATATAAAAAATTTAACTTAAAATCA
        111 AAAAAAATATAAAAAATTCAACTTAAAATCA

        358 NNNNNNNNNN


Statistics
Matches: 119,  Mismatches: 18, Indels: 25
        0.73            0.11        0.15

Matches are distributed among these distances:
 154    1  0.01
 170    2  0.02
 171   98  0.82
 172   18  0.15

ACGTcount: A:0.37, C:0.11, G:0.11, T:0.36


Consensus pattern (154 bp):   
ATAATAAGCCTTTTCAAGGAATACGAGACTATAAATAGACTTTTCTTGCAAATGAATACCTTTTT
CTACAAGTTTCTCGAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAAATATAAAAAATTCA
ACTTAAAATCAATTATGAGATTAT
Done.