Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402693.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5756.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4657
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.39

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:261 original size:19 final size:19

Alignment explanation


    Indices: 237--273  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        227 TGACCTTTTT

                  *            
        237 TTCTTTGTAAATAAAAAAA
          1 TTCTTTATAAATAAAAAAA

                    *         
        256 TTCTTTATTAATAAAAAA
          1 TTCTTTATAAATAAAAAA

        274 TATTTATTAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   16  1.00

ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41


Consensus pattern (19 bp):   
TTCTTTATAAATAAAAAAA
Done.