Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402700.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5763.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1202
ACGTcount: A:0.25, C:0.07, G:0.08, T:0.21

Warning! 459 characters in sequence are not A, C, G, or T


Found at i:721 original size:171 final size:173

Alignment explanation


    Indices: 422--830  Score: 466
    Period size: 171  Copynumber: 2.4  Consensus size: 173

        412 NNNNNNNNNN

                      *        *                         **  *               
        422 AATTATGAGACTATAAAACTATTTAAAGTGAGTAATAAGGCTTTTGCAGTAATGAGTGACTATAA
          1 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAGGAATGAGTGACTATAA

              * **                                              *            
        487 ATGAGCTTTCCTTACCAAAGAATACCTTTTTCTTCACATTTCCCAAGGCAAATATTCAATTATAA
         66 ATAAAATTTCCTTACCAAAGAATACCTTTTTCTTCACATTTCCCAAGGCAAACATTCAATTATAA

                         *                   *        *
        552 TCTGTTCTAAATAGAAATGTA-AAAAAATTCAACCTAAAAT-C
        131 TCTGTTCTAAATAAAAATGTACAAAAAATTCAAACTAAAATGA

                    *                *                             *         
        593 AATTATGAAATTATAAAACCATTTACAGTGAGTAATAAGGCTTTTAAAGGAATGAATGACTATAA
          1 AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAGGAATGAGTGACTATAA

                     **  *    *    **           **    * *   **      *        
        658 ATAAAATTTTTTTGCCAATGAATTTCTTTTTCTTCATGTTTCTCGAGGTTAACATTTAATTATAA
         66 ATAAAATTTCCTTACCAAAGAATACCTTTTTCTTCACATTTCCCAAGGCAAACATTCAATTATAA

                  *   *              *                 
        723 TCTGTTTTAACTAAAAATGTACAAATAATTCAAACTAAAATGA
        131 TCTGTTCTAAATAAAAATGTACAAAAAATTCAAACTAAAATGA

                  *    * *                                         *         
        766 AATT-TCAGATAAGAAAACCATTTAAAGCT-AGTAATAAGGCTTTTAAAGGAATGGGTGACTATA
          1 AATTATGAGATTATAAAACCATTTAAAG-TGAGTAATAAGGCTTTTAAAGGAATGAGTGACTATA

              
        829 AA
         65 AA

        831 NNNNNNNNNN


Statistics
Matches: 197,  Mismatches: 38, Indels: 5
        0.82            0.16        0.02

Matches are distributed among these distances:
 171  123  0.62
 172   69  0.35
 173    5  0.03

ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34


Consensus pattern (173 bp):   
AATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTAAAGGAATGAGTGACTATAA
ATAAAATTTCCTTACCAAAGAATACCTTTTTCTTCACATTTCCCAAGGCAAACATTCAATTATAA
TCTGTTCTAAATAAAAATGTACAAAAAATTCAAACTAAAATGA

Done.