Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402713.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5775.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1218
ACGTcount: A:0.21, C:0.07, G:0.06, T:0.22

Warning! 533 characters in sequence are not A, C, G, or T


Found at i:970 original size:170 final size:161

Alignment explanation


    Indices: 767--1083  Score: 305
    Period size: 170  Copynumber: 1.9  Consensus size: 161

        757 TTATAACCTC

                                     **           *   *          *         * 
        767 ATAATTGATTTTAATTTAAATTTTTTTATATTTTTTATTAAATTAGATTATAATTAAATCTCTGC
          1 ATAATTGATTTTAATTTAAATTTTTCAATATTTTTTATAAAAATAGATTATAACTAAATCTCTAC

              *                       *    *            *     *            * 
        832 CTTGAGAAACATGAAG-AAAAGATATTCATTGGCAAGAAAAGTCTATTTATAGTAACAC-ATACC
         66 CTCGAGAAACATGAAGAAAAAGATATCCATTAGCAAGAAAAGTCCATTTACAGTAAC-CTATAAC

                   *                        
        895 TTCGAAATCCTTATTACTCGGTTTAAATATTT
        130 TTCGAAAGCCTTATTACTCGGTTTAAATATTT

                                       *                  *        *     *   
        927 NNNNNNNNNNATAATTGATTTTAATTTTAATTTTTCAATATTTTTTGTAAAAATATATTATCACT
          1 ----------ATAATTGATTTTAATTTAAATTTTTCAATATTTTTTATAAAAATAGATTATAACT

                *    *          *             *   *                         *
        992 AAATGTCTATCTCGAGAAACGTGAAGAAAAAGATGTCCTTTAGCAAGAAAAGTCCATTTACAGTC
         56 AAATCTCTACCTCGAGAAACATGAAGAAAAAGATATCCATTAGCAAGAAAAGTCCATTTACAGTA

                    *                  
       1057 ACCTATAATTTCGAAAGCCTTATTACT
        121 ACCTATAACTTCGAAAGCCTTATTACT

       1084 ATCTTTAACT


Statistics
Matches: 121,  Mismatches: 24, Indels: 3
        0.82            0.16        0.02

Matches are distributed among these distances:
 170   68  0.56
 171   53  0.44

ACGTcount: A:0.36, C:0.12, G:0.10, T:0.39


Consensus pattern (161 bp):   
ATAATTGATTTTAATTTAAATTTTTCAATATTTTTTATAAAAATAGATTATAACTAAATCTCTAC
CTCGAGAAACATGAAGAAAAAGATATCCATTAGCAAGAAAAGTCCATTTACAGTAACCTATAACT
TCGAAAGCCTTATTACTCGGTTTAAATATTT
Done.