Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397801.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1100.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 894

Length: 1490
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.31

Warning! 237 characters in sequence are not A, C, G, or T


Found at i:416 original size:171 final size:170

Alignment explanation


    Indices: 111--658  Score: 478
    Period size: 171  Copynumber: 3.2  Consensus size: 170

        101 TTCTTTCAAA

                                                 *        *          *  **   
        111 TTTAAGTTGAATTTGTTTACATTTTT-AGTTAAAACAGACTATAATTAAATG-CTTATCTCGAGA
          1 TTTAAGTTGAATTT-TTTACATTTTTGA-TTAAAACATACTATAATCAAATGTC-TACCTTAAGA

                                         *  *    *        *        *      *  
        174 AACGCAT-AA-AAA-AAGCCATTCATTGAGAAAAAAAATCCATTTATAGTCACCCTTTCCTTTAA
         63 AACG--TGAAGAAACAAG-CATTCATTGACAAGAAAAGTCCATTTAGAGTCACCCATTCCTTCAA

              *          * *                              
        236 AAGGCTTATTACTTGATTTAAATGGTTTTATAATCTCATAATTGAT
        125 AAAGCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGAT

              *  *                                       ************  *     
        282 TTCAAATTGAATTGTTTTACATTTTTGATTAAAACATACTATAATTGNNNNNNNNNNTTGAGAAA
          1 TTTAAGTTGAATT-TTTTACATTTTTGATTAAAACATACTATAATCAAATGTCTACCTTAAGAAA

                        *                     *            **                
        347 CGTGAAGAAACAGGCATTCATTGACAAGAAAAGTACATTTAGAGTCATTCATTCCTTCAAAAAGC
         65 CGTGAAGAAACAAGCATTCATTGACAAGAAAAGTCCATTTAGAGTCACCCATTCCTTCAAAAAGC

                        *       **********           
        412 TTATTACTCGCTCTAAATGGNNNNNNNNNNTCATAATTGAT
        130 TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGAT

                                *                                            
        453 TTTAAGTTGAATTTTTTACACTTTTGATTAAAACATACTATAATCAAATGTCTACCTTAAGAAAC
          1 TTTAAGTTGAATTTTTTACATTTTTGATTAAAACATACTATAATCAAATGTCTACCTTAAGAAAC

                     *  *          *            *                            
        518 GTGAAGAAATAATCATTCATTGATAAGAAAAGTCCAATTAGAGTCACCCATTCCTTC-AAAAGTC
         66 GTGAAGAAACAAGCATTCATTGACAAGAAAAGTCCATTTAGAGTCACCCATTCCTTCAAAAAG-C

                   *        *       *                
        582 TTATTACCCGCTTTAAGTGGTTTTCTAATCTCATAATTGAT
        130 TTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGAT

                                  *   **        
        623 TTTAAGTTGAATTTTTTTACATATTTCTTTAAAACA
          1 TTTAAGTTGAA-TTTTTTACATTTTTGATTAAAACA

        659 GNNNNNNNNN


Statistics
Matches: 290,  Mismatches: 79, Indels: 16
        0.75            0.21        0.04

Matches are distributed among these distances:
 169    6  0.02
 170  129  0.44
 171  151  0.52
 172    4  0.01

ACGTcount: A:0.35, C:0.14, G:0.11, T:0.36


Consensus pattern (170 bp):   
TTTAAGTTGAATTTTTTACATTTTTGATTAAAACATACTATAATCAAATGTCTACCTTAAGAAAC
GTGAAGAAACAAGCATTCATTGACAAGAAAAGTCCATTTAGAGTCACCCATTCCTTCAAAAAGCT
TATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGAT

Done.