Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402736.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5797.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2417
ACGTcount: A:0.26, C:0.09, G:0.10, T:0.26

Warning! 700 characters in sequence are not A, C, G, or T


Found at i:2104 original size:19 final size:19

Alignment explanation


    Indices: 2061--2104  Score: 52
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       2051 NNNNNGTTTT

                            ** 
       2061 AAAATAAAATAATATTTTA
          1 AAAATAAAATAATATTAAA

            **                 
       2080 CTAATAAAATAATATTAAA
          1 AAAATAAAATAATATTAAA

                  
       2099 AAAATA
          1 AAAATA

       2105 CTGATATCAG


Statistics
Matches: 19,  Mismatches: 6, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32


Consensus pattern (19 bp):   
AAAATAAAATAATATTAAA
Done.