Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018402741.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5801.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2473
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38


Found at i:573 original size:26 final size:25

Alignment explanation


    Indices: 516--573  Score: 64
    Period size: 26  Copynumber: 2.3  Consensus size: 25

        506 TATGTTCATT

                                     
        516 AACAATTTAATAAACAAATAAAAAA
          1 AACAATTTAATAAACAAATAAAAAA

              *          *           * 
        541 AAGAATTGTAATATACAAA-ATAAAGA
          1 AACAATT-TAATAAACAAATA-AAAAA

                   
        567 AACAATT
          1 AACAATT

        574 CATTCGAGTT


Statistics
Matches: 27,  Mismatches: 4, Indels: 3
        0.79            0.12        0.09

Matches are distributed among these distances:
  25    7  0.26
  26   20  0.74

ACGTcount: A:0.66, C:0.07, G:0.05, T:0.22


Consensus pattern (25 bp):   
AACAATTTAATAAACAAATAAAAAA
Done.